View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10074_low_4 (Length: 426)

Name: NF10074_low_4
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10074_low_4
NF10074_low_4
[»] chr7 (4 HSPs)
chr7 (17-420)||(25636181-25636584)
chr7 (358-415)||(25442330-25442387)
chr7 (346-415)||(25484269-25484338)
chr7 (341-420)||(25478978-25479057)
[»] chr2 (5 HSPs)
chr2 (344-413)||(35177985-35178054)
chr2 (347-413)||(35169694-35169760)
chr2 (346-413)||(35183983-35184050)
chr2 (346-413)||(35106034-35106101)
chr2 (44-77)||(35016693-35016726)
[»] chr5 (2 HSPs)
chr5 (346-420)||(500361-500435)
chr5 (19-96)||(41283293-41283376)
[»] chr1 (3 HSPs)
chr1 (19-78)||(32617848-32617907)
chr1 (22-78)||(9457469-9457525)
chr1 (22-78)||(9461566-9461622)
[»] chr4 (4 HSPs)
chr4 (19-76)||(28146812-28146869)
chr4 (19-78)||(25967824-25967883)
chr4 (24-78)||(55606522-55606575)
chr4 (44-77)||(11440419-11440452)
[»] chr8 (1 HSPs)
chr8 (44-76)||(23490254-23490286)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 25636181 - 25636584
Alignment:
Q  17 agaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcggaccgttttttaaaaccttttagtatataaatgtctaat 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25636181 agaaacggtgaaaaacagtagcatcatctacctatacctttttgtcgcggcctttttctcggaccgttttttaaaaccttttagtatataaatgtctaat 25636280  T
Q  117 tatcttcactaatatttaaaatttgtgcattttatctcttttattcacttcaaaattatagcaatgaacaacttcattcgttgtgagaaatagagacgga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25636281 tatcttcactaatatttaaaatttgtgcattttatctcttttattcacttcaaaattatagcaatgaacaacttcattcgttgtgagaaatagagacgga 25636380  T
Q  217 tccttaacctttgtaaagggccccattggactcatctatcactttttaattcaaatcaaacctgtagggcaagagaggtataatacaacttcaatttctt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25636381 tccttaacctttgtaaagggccccattggactcatctatcactttttaattcaaatcaaacctgtagggcaagtgaggtataatacaacttcaatttctt 25636480  T
Q  317 cgatggattctgatagcagcgaaggctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25636481 cgatggattctgatagcagcgaaggctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctcta 25636580  T
Q  417 tgct 420  Q
    ||||    
T  25636581 tgct 25636584  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 25442330 - 25442387
Alignment:
Q  358 gatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctct 415  Q
    ||||| || |||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  25442330 gatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctct 25442387  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 25484269 - 25484338
Alignment:
Q  346 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctct 415  Q
    ||||||| ||| ||||| || ||||||||||||||| |||||||||| ||  ||||||||||||||||||    
T  25484269 agctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctct 25484338  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 25479057 - 25478978
Alignment:
Q  341 gctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctctgct 420  Q
    ||||||| |||| ||| || || ||||||||||||||||||  ||||||||| || ||||||| ||||||||||| ||||    
T  25479057 gctatagatatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgct 25478978  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 35178054 - 35177985
Alignment:
Q  344 atagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatct 413  Q
    ||||||||||||| || || |||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  35178054 atagctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatct 35177985  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 35169760 - 35169694
Alignment:
Q  347 gctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatct 413  Q
    |||||||||| ||||| |||||||||||||||||  |||||||||| ||||| |||||||| |||||    
T  35169760 gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatct 35169694  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 35184050 - 35183983
Alignment:
Q  346 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatct 413  Q
    ||||||| ||||||||| |||||||||||| | ||| |||||||||||| ||| |||||||| |||||    
T  35184050 agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatct 35183983  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 35106101 - 35106034
Alignment:
Q  346 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatct 413  Q
    ||||||| ||| || || |||||||||||||||||||| ||||| |||||||| ||||| || |||||    
T  35106101 agctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatct 35106034  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 35016693 - 35016726
Alignment:
Q  44 ctacctatacctttttgtcgcggcctttttctcg 77  Q
    ||||||||||||||||||||||||| ||||||||    
T  35016693 ctacctatacctttttgtcgcggccattttctcg 35016726  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 420
Target Start/End: Complemental strand, 500435 - 500361
Alignment:
Q  346 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctctgct 420  Q
    ||||||| ||||||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||||| ||||    
T  500435 agctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgct 500361  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 41283376 - 41283293
Alignment:
Q  19 aaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttct------cggaccgttttttaaaacctt 96  Q
    |||||||||||||| ||| ||||  |||||||||| |||||||| || |||||||||      |||||||||||||||||||||    
T  41283376 aaacggtgaaaaacggtaacgtccgctacctatacttttttgtcacgacctttttcttagtaacggaccgttttttaaaacctt 41283293  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 32617848 - 32617907
Alignment:
Q  19 aaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg 78  Q
    |||||||||||||| ||| ||||  |||||||||||||||||| ||||||||||||||||    
T  32617848 aaacggtgaaaaacggtaacgtccgctacctatacctttttgtggcggcctttttctcgg 32617907  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9457525 - 9457469
Alignment:
Q  22 cggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg 78  Q
    ||||||||||| | | ||||  || |||||||||||||||||||||||||| |||||    
T  9457525 cggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactcgg 9457469  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9461622 - 9461566
Alignment:
Q  22 cggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg 78  Q
    ||||||||||| | | ||||  || |||||||||||||||||||||||||| |||||    
T  9461622 cggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactcgg 9461566  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 28146869 - 28146812
Alignment:
Q  19 aaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctc 76  Q
    |||||||||||||| |||  |||  |||||||||||||||||| ||||||||||||||    
T  28146869 aaacggtgaaaaacggtaatgtccgctacctatacctttttgttgcggcctttttctc 28146812  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 25967883 - 25967824
Alignment:
Q  19 aaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg 78  Q
    |||||||| ||||| ||| ||||  ||||||||||||||||||||| ||||| |||||||    
T  25967883 aaacggtggaaaacggtaacgtccgctacctatacctttttgtcgcagccttattctcgg 25967824  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 55606522 - 55606575
Alignment:
Q  24 gtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg 78  Q
    ||||||||| ||| ||||  |||||||||||||||||||| ||||||||||||||    
T  55606522 gtgaaaaacggtaacgtccactacctatacctttttgtcg-ggcctttttctcgg 55606575  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 11440452 - 11440419
Alignment:
Q  44 ctacctatacctttttgtcgcggcctttttctcg 77  Q
    ||||||||||||||||| ||||||||||||||||    
T  11440452 ctacctatacctttttgccgcggcctttttctcg 11440419  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 23490254 - 23490286
Alignment:
Q  44 ctacctatacctttttgtcgcggcctttttctc 76  Q
    |||||||||||||||||||||||||||||||||    
T  23490254 ctacctatacctttttgtcgcggcctttttctc 23490286  T

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