View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10074_low_5 (Length: 366)
Name: NF10074_low_5
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 27514747 - 27514410
Alignment:
| Q |
19 |
gatgtaagttgtaactaaatatttgatgatgccaatgagttgtgctttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaa |
118 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27514747 |
gatgtaagttttaactaaatacttgatgatgccaatgagttgtgctttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaa |
27514648 |
T |
|
| Q |
119 |
attccaagaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaac- |
217 |
Q |
| |
|
||| ||||| ||||||||||||| ||| |||| ||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27514647 |
atttcaagagaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaaca |
27514548 |
T |
|
| Q |
218 |
aatgtccaatacaaagcttccacttgctaccaaatgagatgtgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27514547 |
aatgtccaatacaaagcttccacttgctaccaaatgagatgt-cagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgct |
27514449 |
T |
|
| Q |
318 |
tcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27514448 |
ttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 27468612 - 27468957
Alignment:
| Q |
19 |
gatgtaagttgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaacc |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27468612 |
gatgtaagttgaaactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagtgtatttatagattttgaagttctctcaaaatc |
27468711 |
T |
|
| Q |
117 |
aaattccaagaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaa |
216 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| |||| ||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27468712 |
aaatttcaacaaaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaa |
27468811 |
T |
|
| Q |
217 |
c-aatgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgttgatgatttaattggtgtacttcataattttg |
307 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
27468812 |
caaatgtccaatacaaagcttccacttgctaccaaatgagatgtgctcaagtgcagcctcatatttcttcatgatttaattggtgtacttcataattttg |
27468911 |
T |
|
| Q |
308 |
taaacatgcttcagacatgttttcttcattatgataatgctgatgt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27468912 |
taaacatgcttcagacatgttttcttcattatgataatgccgatgt |
27468957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 27524378 - 27524041
Alignment:
| Q |
28 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaattccaa |
125 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | || || ||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
27524378 |
tgtaactaaatatttgataatgc-aatgagtttttctgtttgtgaaggagagaggaagtttatatatagattttaaagttctctcaaacccaaatttcaa |
27524280 |
T |
|
| Q |
126 |
gaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaatgtcca |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27524279 |
gaaaaactattattgaaggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaatatcca |
27524180 |
T |
|
| Q |
226 |
atacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgct |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| |||||||| || |||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
27524179 |
atacaaagcttccaattgctaccaaatgagatgtgctcaagtgcaacgtcatatttcttcatgatttaattggtttccttcataatttcgtaaacatgct |
27524080 |
T |
|
| Q |
318 |
tcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27524079 |
tcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 28 - 353
Target Start/End: Original strand, 27475854 - 27476187
Alignment:
| Q |
28 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaattccaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27475854 |
tgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaa |
27475953 |
T |
|
| Q |
126 |
gaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtcc |
224 |
Q |
| |
|
|| ||||||||||||| ||| |||| ||||| ||| || ||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
27475954 |
gagaaactattattgaagggtttgatggatagagagcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtcc |
27476053 |
T |
|
| Q |
225 |
aatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgc |
316 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||| | | | |||||||||||| ||||| |
|
|
| T |
27476054 |
aatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaagcatgc |
27476150 |
T |
|
| Q |
317 |
ttcagacatgttttcttcattatgataatgctgatgt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27476151 |
ttcagacatgttttcttcattatgataatgccgatgt |
27476187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 27503777 - 27503442
Alignment:
| Q |
28 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaattccaa |
125 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| | |
|
|
| T |
27503777 |
tgtaattaagtatttgatgatgc-aatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctcaaaacccaattccta |
27503679 |
T |
|
| Q |
126 |
gaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtcc |
224 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
27503678 |
gaaaaactattattgaaggggtggaaggatagagatcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaatgtcc |
27503579 |
T |
|
| Q |
225 |
aatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgc |
316 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||| | | | |||||||||||||||||| |
|
|
| T |
27503578 |
aatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaaacatgc |
27503482 |
T |
|
| Q |
317 |
ttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27503481 |
ttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 27508721 - 27508488
Alignment:
| Q |
28 |
tgtaactaaatatttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaattccaa |
125 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| | |
|
|
| T |
27508721 |
tgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctcaaaacccaattccta |
27508622 |
T |
|
| Q |
126 |
gaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaatgtcca |
225 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27508621 |
gaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaacaatgtcca |
27508522 |
T |
|
| Q |
226 |
atacaaagcttccacttgctaccaaatgagatgt |
259 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
27508521 |
atacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 27489723 - 27489628
Alignment:
| Q |
259 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 27506325 - 27506263
Alignment:
| Q |
294 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
295 |
cttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
| Q |
297 |
tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||| |
|
|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 27479399 - 27479461
Alignment:
| Q |
294 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27479399 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 27486459 - 27486524
Alignment:
| Q |
294 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccatct |
359 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| | | || |||||||||||| |
|
|
| T |
27486459 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 27526747 - 27526689
Alignment:
| Q |
292 |
gtacttcataattttgtaaacatgcttcagacatg-ttttcttcattatgataatgctg |
349 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27526747 |
gtacttcataattttgaaaacattgttcagacatgtttttcttcattatgataatgctg |
27526689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 27497858 - 27497908
Alignment:
| Q |
304 |
tttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtc |
354 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 27517451 - 27517369
Alignment:
| Q |
175 |
tagcatgtggtgttgtcttc-gagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
256 |
Q |
| |
|
|||||||||| |||||||| || ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
27517451 |
tagcatgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 27431937 - 27431878
Alignment:
| Q |
296 |
ttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
||||||||||||||||||||| | | ||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
27431937 |
ttcataattttgtaaacatgcattatacatg-tttcttcatcttgataatgttgatgtcca |
27431878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 27554101 - 27554164
Alignment:
| Q |
292 |
gtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
356 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| |||||||||| |||||||| |||| |||| |
|
|
| T |
27554101 |
gtacttcataattttgcaaacatgtctaagacatg-tttcttcattttgataatgttgatctcca |
27554164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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