View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_low_6 (Length: 356)
Name: NF10074_low_6
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 27 - 342
Target Start/End: Complemental strand, 33386136 - 33385821
Alignment:
| Q |
27 |
cctctgtatttatcaattgttccatatggttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca |
126 |
Q |
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| T |
33386136 |
cctctgtatttatcaattgttccatatgtttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca |
33386037 |
T |
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| Q |
127 |
ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaagttcttggaggtttgctggatcc |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33386036 |
ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaacttcttggaggtttgctggatcc |
33385937 |
T |
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| Q |
227 |
tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgattacgatcttcttgtacacctttaggcatgtttcttccatcaattattt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385936 |
tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgattatgatcttcttgtacacctttaggcatgtttcttccatcaattattt |
33385837 |
T |
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| Q |
327 |
tggtgttttttgaatc |
342 |
Q |
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|||||||||||||||| |
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| T |
33385836 |
tggtgttttttgaatc |
33385821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 33386981 - 33386952
Alignment:
| Q |
55 |
gttttagtttcttttcaaaatttgtttata |
84 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33386981 |
gttttagtttcttttcaaaatttgtttata |
33386952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 25428240 - 25428290
Alignment:
| Q |
300 |
taggcatgtttcttccatcaattattttggtgttttttgaatctctgcttc |
350 |
Q |
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| T |
25428240 |
taggcatgttcctcccatcaattattttggtgttttctgaatctttgcttc |
25428290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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