View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_low_8 (Length: 331)
Name: NF10074_low_8
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 4973429 - 4973745
Alignment:
| Q |
1 |
taaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973429 |
taaccataagaactttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
4973528 |
T |
|
| Q |
101 |
gagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatagttttaaattacagttacggtcacgttgcagacttttata-ttgca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4973529 |
gagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatggttttaaattacagttacggtcacgttgcagacttttatatttgca |
4973628 |
T |
|
| Q |
200 |
gttgagatgttgttgcagaagcttcnnnnnnnnttatattgcaattgcaattgcaaaccgcaatctaaataaaattatatcttgtaatttaaaggctaag |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4973629 |
gttgagatgttgttgcagaagcttcaaaaaaaattatattgcaattgcaattgcaaactgcaatctaagtaaaattatatcttgtagtttaaaggctaag |
4973728 |
T |
|
| Q |
300 |
ttctgaatattttgttt |
316 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
4973729 |
ttctgaatattttgttt |
4973745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 4991337 - 4991653
Alignment:
| Q |
1 |
taaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991337 |
taaccataagaactttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
4991436 |
T |
|
| Q |
101 |
gagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatagttttaaattacagttacggtcacgttgcagacttttata-ttgca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4991437 |
gagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatggttttaaattacagttacggtcacgttgcagacttttatatttgca |
4991536 |
T |
|
| Q |
200 |
gttgagatgttgttgcagaagcttcnnnnnnnnttatattgcaattgcaattgcaaaccgcaatctaaataaaattatatcttgtaatttaaaggctaag |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
4991537 |
gttgagatgttgttgcagaagcttcaaaaaaaattatattgcaattgcaattgcaaactgcaatctaagtaaaattatatcttgtagtttaaaggctaag |
4991636 |
T |
|
| Q |
300 |
ttctgaatattttgttt |
316 |
Q |
| |
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||||||||||||||||| |
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| T |
4991637 |
ttctgaatattttgttt |
4991653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 35832266 - 35832150
Alignment:
| Q |
1 |
taaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
100 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||||||| | | || || |||||||||||||||||| ||| |
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|
| T |
35832266 |
taaccataagaactttaccaatcttattggttactgtgacgaagaagaaccattcacaaggatgatggtgttggagtatgctccaaatggaagcttattc |
35832167 |
T |
|
| Q |
101 |
gagcatctacatggtaa |
117 |
Q |
| |
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||||||||||||||||| |
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|
| T |
35832166 |
gagcatctacatggtaa |
35832150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 37747882 - 37747772
Alignment:
| Q |
2 |
aaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatctg |
101 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| ||||| |||||||| || ||||| || ||||| | ||||||||||| |||||||||| |||| || |
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| T |
37747882 |
aaccacaagaattttgtcaatcttattggatattgtgaagaagaagagcctttcaccagaatgttggtttttgaatatgccccaaatggaacactatttg |
37747783 |
T |
|
| Q |
102 |
agcatctacat |
112 |
Q |
| |
|
||||| ||||| |
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|
| T |
37747782 |
agcatttacat |
37747772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 26492453 - 26492338
Alignment:
| Q |
2 |
aaccataagaattttgttaatctaattggatactgtgaggaagaagaa-ccattcacaaggatgtttatatttgaatatgctccaaatggaagcctatct |
100 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| || ||||| || ||| || ||||||||||||||| | | ||||| |||||||| ||||||| || | | |
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| T |
26492453 |
aaccacaagaattttgtgaatcttattggttattgtgaaga-gaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgttt |
26492355 |
T |
|
| Q |
101 |
gagcatctacatggtaa |
117 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
26492354 |
gagcatctacatagtaa |
26492338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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