View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10074_low_9 (Length: 321)
Name: NF10074_low_9
Description: NF10074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10074_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 40764251 - 40764561
Alignment:
| Q |
1 |
catttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764251 |
catttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaagga |
40764350 |
T |
|
| Q |
101 |
acacactatctggttatgattattctcatctatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764351 |
acacactatctggttatgattattctcatcgatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactat |
40764450 |
T |
|
| Q |
201 |
taaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaacttatttttctagtgcgtgcaatcttgaactgccaacttcactc |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40764451 |
taaccccattatcagctgaatgccaattcaaatactttgttttttagggtaataaacttatttttttagtgcgtgcaatcttgaactgccaacttcactc |
40764550 |
T |
|
| Q |
301 |
ctactcctatg |
311 |
Q |
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||||||||||| |
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| T |
40764551 |
ctactcctatg |
40764561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 42911898 - 42912029
Alignment:
| Q |
1 |
catttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42911898 |
catttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaatga |
42911997 |
T |
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| Q |
101 |
acacact----atctggttatgattattctca |
128 |
Q |
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|||||| |||| |||||||||||||||| |
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| T |
42911998 |
acacacactcaatcttgttatgattattctca |
42912029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 311
Target Start/End: Original strand, 42912038 - 42912182
Alignment:
| Q |
161 |
tgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaactta |
260 |
Q |
| |
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|||||||||||| |||| | ||||||||||| | |||||||||||||||| ||||| || ||||||||||||| |||||||| ||||||||||||| |
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| T |
42912038 |
tgttttctcacatctttaacgctatcaaattatttgttattaaccacattatcggctgagtgtcaattcaaatact--gttttttagggtaataaactta |
42912135 |
T |
|
| Q |
261 |
tttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatg |
311 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
42912136 |
tttttctagtgc----aatcttgaactgccaacttcacccctactcctatg |
42912182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41661980 - 41661931
Alignment:
| Q |
1 |
catttcgtgcagagaattctcacacttccaggcatttggctgaattttgg |
50 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
41661980 |
catttcgagcagagaattctaacacttccaggcacttggctgaattttgg |
41661931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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