View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_1 (Length: 748)
Name: NF10075_low_1
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 15 - 732
Target Start/End: Complemental strand, 50712538 - 50711853
Alignment:
| Q |
15 |
caaaggcgtaaaagatgagggtctagaggtccctatatcacagggtgctgaaggtaaagtttcaggaaatgtacttgctggtgacaaaaattcagtttca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50712538 |
caaaggcgtaaaagatgagggtctagaggtccctatatcacaaggtgctgaaggtaaagtttcaggaaatgtacttgctggtgacaaaaattcactttca |
50712439 |
T |
|
| Q |
115 |
tattcaaggactccagaagaaatattgaggatagtgtatggtcgatatgaaattgttcctggtggcttctttcctaagggagcagatggtcgtatagcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50712438 |
tattcaaggactccagaagaaatattgaggatagtgtatggtcgatatgaaattgttcctggtggcttctttcctaagggagcagatggtcgtatagcta |
50712339 |
T |
|
| Q |
215 |
agtgtctagtagctacttctataggttaagactataaactatgttgttgagtttaatgaataaaataaataatgtcttagaggtaactataaattaacta |
314 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| | || ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
50712338 |
agtgtctagtagctacttctataggttaa-------------------gagttaa--gactaaaataaacaatgtcttagaggtaactataaataaacta |
50712260 |
T |
|
| Q |
315 |
tgttaattaagttataataaaaaacaatgtataagaggtgtcggaataaaggagtataaatctcatatatatgagattgttgtaataacgatattccaag |
414 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
50712259 |
tgttaa----gttataataaaaaacaatgtataagaggtgtcggaataaaggagtataaatctcatat----gagattgttgta-taacgatattccaag |
50712169 |
T |
|
| Q |
415 |
ttgagttataataatttactttttcttttgacaaaagttataataatctctatgttattgttttgagggttacttacctattacctataatacatatgta |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50712168 |
ttgagttataataatttactttttcttttgacaaaagttataataatctctatgttattgttttgagggttacttacctattacctataatgcatatgta |
50712069 |
T |
|
| Q |
515 |
ccagtacgtaatacgataaattttaaaaagtgaaagtacgaatagttgatgtaaaacatccaaaaaagatatttcaagtaaattattatcattgttgttt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50712068 |
ccagtacgtaatacgataaattttaaaaagtgaaagtacgaatagttgctgtaaaacatccaaaaaagatgtttcaagtaaattattatcattgttgttt |
50711969 |
T |
|
| Q |
615 |
taaaaacatgtttagaaaagaaattcaattttaataaaaatggtataatattattcatattttaattatgtttaaccatacttctattatcatgttggtt |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
50711968 |
taaaaacatgtttagaaaagaaattcaattttaataaaaatggtataatattattcatatcttaattatgtttaaccatac--ctattatcatgttggtt |
50711871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 685
Target Start/End: Original strand, 2044442 - 2044539
Alignment:
| Q |
591 |
agtaaattattatcattgttgttttaaaaacatgtttagaaaagaaat---tcaattttaataaaaatggtataatattattcatattttaattatgt |
685 |
Q |
| |
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||||||||| || |||||||||| |||||||||| |||||||| ||| |||||| |||||||||| |||||| | ||||||||||||||| |||| |
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| T |
2044442 |
agtaaattactaccattgttgttgtaaaaacatgcttagaaaaaaaaaaaatcaattataataaaaatagtataacactattcatattttaatcatgt |
2044539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 658 - 728
Target Start/End: Complemental strand, 37161971 - 37161899
Alignment:
| Q |
658 |
tataatattattcatattttaattatgt--ttaaccatacttctattatcatgttggttccgagatttatttt |
728 |
Q |
| |
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||||||||||||| ||||||||| |||| ||||| |||||||||| ||||||||| ||| |||||||||||| |
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| T |
37161971 |
tataatattattcgtattttaatcatgtatttaactatacttctatcatcatgttgcttcagagatttatttt |
37161899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 685
Target Start/End: Complemental strand, 7860342 - 7860176
Alignment:
| Q |
523 |
taatacgataaattttaaaaagtgaaagtacgaata-gttgatgtaaaacatccaaaaaagatatttcaagtaaattattatcattgttgttttaaaaac |
621 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||| ||||||||| ||||||| |||||||| ||||| || ||||||||| ||||||| |
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| T |
7860342 |
taatacgataaattttaaaaaatgaaagtacgggtacgttgatataaaacatcagtaaaagatttttcaagtgaattactaccattgttgtggtaaaaac |
7860243 |
T |
|
| Q |
622 |
atgtttagaaaagaaattcaattttaat---aaaaatggtataatattattcatattttaattatgt |
685 |
Q |
| |
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|| |||||||| ||| ||||||||||| || ||| |||||||| ||||||||||||||| |||| |
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| T |
7860242 |
atacttagaaaaaaaaatcaattttaattaaaataatagtataatactattcatattttaatcatgt |
7860176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 701
Target Start/End: Complemental strand, 28482751 - 28482678
Alignment:
| Q |
630 |
aaaagaaattcaattttaataaaaatggtataatattattcatattttaattatgt--ttaaccatacttctat |
701 |
Q |
| |
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|||| |||| ||||| |||||||||| |||||||| |||||||||||||| |||| ||||||| |||||||| |
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| T |
28482751 |
aaaaaaaatccaattataataaaaatagtataatactattcatattttaaccatgtacttaaccacacttctat |
28482678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 595 - 724
Target Start/End: Original strand, 705580 - 705713
Alignment:
| Q |
595 |
aattattatcattgttgttttaaaaacatgtttagaaaagaaat-tcaattttaataaaaa-tggtataatattattcatattttaatta--tgtttaac |
690 |
Q |
| |
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||||| || |||||||||| ||||||||| |||||||| ||| |||||| ||||||||| | |||||||| ||||| ||||||||||| ||||| || |
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| T |
705580 |
aattaatagcattgttgttgtaaaaacattcttagaaaaaaaaaatcaattataataaaaaatagtataatactattcgtattttaattatgtgtttgac |
705679 |
T |
|
| Q |
691 |
catacttctattatcatgttggttccgagattta |
724 |
Q |
| |
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|| |||||||| ||||||||| ||| |||||||| |
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| T |
705680 |
cacacttctatcatcatgttgcttcagagattta |
705713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 12783859 - 12783971
Alignment:
| Q |
103 |
aattcagtttcatattcaaggactccagaagaaatattgaggatagtgtatgg---tcgatatgaaattgttcctggtggcttctttcctaagggagcag |
199 |
Q |
| |
|
|||||| | |||||| ||||||||||| |||||||||||||||| | ||||| | | |||| | ||| ||||||||||||| ||||||||||||| |
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| T |
12783859 |
aattcactatcatatccaaggactccacaagaaatattgaggattatatatggaagtggtaatgagagtgtccctggtggcttctaccctaagggagcag |
12783958 |
T |
|
| Q |
200 |
atggtcgtatagc |
212 |
Q |
| |
|
||||||||||||| |
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| T |
12783959 |
atggtcgtatagc |
12783971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 12771958 - 12772025
Alignment:
| Q |
76 |
tcaggaaatgtacttgctggtgacaaaaattcagtttcatattcaaggactccagaagaaatattgag |
143 |
Q |
| |
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||||||||| | ||||||||||| ||||||||| | ||||||||||| |||||| | ||||||||||| |
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| T |
12771958 |
tcaggaaatatccttgctggtgataaaaattcactatcatattcaagaactccaaatgaaatattgag |
12772025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 12762584 - 12762618
Alignment:
| Q |
112 |
tcatattcaaggactccagaagaaatattgaggat |
146 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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|
| T |
12762584 |
tcatattcaaggactccacaagaaatattgaggat |
12762618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 595 - 707
Target Start/End: Complemental strand, 12500109 - 12499995
Alignment:
| Q |
595 |
aattattatcattgttgttttaaaaacatgtttagaaaagaaattcaattttaat-aaaaatggtataatattattcatattttaat--tatgtttaacc |
691 |
Q |
| |
|
||||| |||||| |||||| |||||| |||||||||||| ||| |||||| |||| |||||| |||||||||||||| |||||| || | ||||||||| |
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| T |
12500109 |
aattactatcatagttgttgtaaaaa-atgtttagaaaaaaaaatcaattataatgaaaaatagtataatattattcgtattttgatcatgtgtttaacc |
12500011 |
T |
|
| Q |
692 |
atacttctattatcat |
707 |
Q |
| |
|
| |||||||| ||||| |
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|
| T |
12500010 |
acacttctatcatcat |
12499995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 633
Target Start/End: Complemental strand, 10356022 - 10355948
Alignment:
| Q |
559 |
gttgatgtaaaacatccaaaaaagatatttcaagtaaattattatcattgttgttttaaaaacatgtttagaaaa |
633 |
Q |
| |
|
|||||| || ||||| |||||| ||||||||||||| ||| || |||||||||| |||||||||| |||||||| |
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| T |
10356022 |
gttgatatacaacattaaaaaaaaatatttcaagtaatttactaccattgttgttgtaaaaacatgcttagaaaa |
10355948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 685
Target Start/End: Original strand, 4237195 - 4237291
Alignment:
| Q |
590 |
aagtaaattattatcattgttgttttaaaaacatgtttag-aaaagaaattcaattttaataaaaatggtataatattattcatattttaattatgt |
685 |
Q |
| |
|
|||| ||||| |||||| ||||| | ||||||||||||| |||| ||| |||||| | |||||||| |||||||| ||||||||| ||||| |||| |
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|
| T |
4237195 |
aagtgaattactatcatgtttgttgttaaaacatgtttagaaaaaaaaaatcaattatgataaaaatagtataataatattcatatattaataatgt |
4237291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 680
Target Start/End: Original strand, 4227957 - 4228049
Alignment:
| Q |
590 |
aagtaaattattatcattgttgttttaaaaacatgtttag--aaaagaaattcaattttaataaaaatggtataatattattcatattttaat |
680 |
Q |
| |
|
|||| ||||| |||||| ||||| | ||||||||||||| |||| ||| |||||| | |||||||| |||||||| ||||||||| ||||| |
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|
| T |
4227957 |
aagtgaattactatcatgtttgttgttaaaacatgtttagaaaaaaaaaaatcaattatgataaaaatagtataatactattcatatattaat |
4228049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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