View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_11 (Length: 300)
Name: NF10075_low_11
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 48422457 - 48422733
Alignment:
| Q |
17 |
acctacaagagaagaataagatatattgtccgatttgaaaaccactttaggtaaagcatttagataggggagggtcctaaaccattttagcaaaaacttt |
116 |
Q |
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| T |
48422457 |
acctacaagagaagaataagatatattgtccgatttgaaaaccactttaggtaaagcatttagataggggagggtcctaaaccattttagcaaaaacttt |
48422556 |
T |
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| Q |
117 |
aacttgtttatttgggatgtacgatgtaaagacgataatattgtaaaattaatttacttctttatttggaatatataatctaatgacgatattgacagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48422557 |
aacttgtttatttgggatgtacgatgtaaagacgataatattgtaaaattaatttacttctttatttagaatatataatctaatgacgatattgacagca |
48422656 |
T |
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| Q |
217 |
cttgtaatatgaattttgttttgttcaatttagacatttaatgctcgagtatttgtcgttttcccacaggttctgct |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48422657 |
cttgtaatatgaattttgttttgttcaatttagacatttaatgctcgagtatttgtcgttttcccactggttttgct |
48422733 |
T |
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