View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_12 (Length: 294)
Name: NF10075_low_12
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_12 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 41388188 - 41388466
Alignment:
| Q |
1 |
taccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttaccgagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388188 |
taccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttaccgagcg |
41388287 |
T |
|
| Q |
101 |
tggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagcttgaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388288 |
tggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagcttgaaact |
41388387 |
T |
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| Q |
201 |
tcaaaaacaagttctgctgttgagaagagctatgagcttcctgatggacagatcatcactattggtgctgagcgtttcc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41388388 |
tcaaaaacaagttctgctgttgagaagagctatgagcttcctgatggacagataatcactattggtgctgagcgtttcc |
41388466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 59579 - 59308
Alignment:
| Q |
6 |
atctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttaccgagcgtggtt |
105 |
Q |
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| T |
59579 |
atctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgactgattacatgatgaaaattctgacagaacgtggtt |
59480 |
T |
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| Q |
106 |
attctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagcttgaaacttcaaa |
205 |
Q |
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| T |
59479 |
attcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggcttacattgcccttgactatgagcaagagctagagacatccaa |
59380 |
T |
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| Q |
206 |
aacaagttctgctgttgagaagagctatgagcttcctgatggacagatcatcactattggtgctgagcgttt |
277 |
Q |
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| T |
59379 |
gaccagctctgcagtggagaagagctatgagttgcctgatgggcaagtcatcactattggcgctgagcgttt |
59308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 68229 - 68502
Alignment:
| Q |
6 |
atctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttaccgagcgtggtt |
105 |
Q |
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||||| |||||||||||||||||||| || ||||| ||| | ||| | ||||| ||||| ||||| || ||| | ||||||||| | ||||||||||| | |
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| T |
68229 |
atctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggtcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggat |
68328 |
T |
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| Q |
106 |
attctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagcttgaaacttcaaa |
205 |
Q |
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| T |
68329 |
actctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaactatcctacattgctcttgattatgaacaagagttagaaacctcgaa |
68428 |
T |
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| Q |
206 |
aacaagttctgctgttgagaagagctatgagcttcctgatggacagatcatcactattggtgctgagcgtttcc |
279 |
Q |
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| T |
68429 |
gacgagctcagctgttgagaagagctatgagttacctgatggacaggtgatcacaataggtgccgaacgtttcc |
68502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 37050757 - 37050495
Alignment:
| Q |
9 |
tacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttatt |
108 |
Q |
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||||| |||||||| ||||||||||| ||||||||| | ||| | ||||| ||||| ||||||||||| |||||||| || | ||||||||||| || |
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| T |
37050757 |
tacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctaca |
37050658 |
T |
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| Q |
109 |
ctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaac |
208 |
Q |
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| T |
37050657 |
ctttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaattggcttatattgctcttgattacgagcaggagttggaaactgctaaaac |
37050558 |
T |
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| Q |
209 |
aagttctgctgttgagaagagctatgagcttcctgatggacagatcatcactattggtgctga |
271 |
Q |
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|| || ||||||||||||| ||||||||| |||||||| ||| | ||||| || |||||||| |
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| T |
37050557 |
tagctcagctgttgagaagacctatgagctacctgatgggcaggtgatcacgatcggtgctga |
37050495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 8689614 - 8689801
Alignment:
| Q |
6 |
atctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttaccgagcgtggtt |
105 |
Q |
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| T |
8689614 |
atctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggtcgtgaccttaccgatttcttgatgaagattttgactgaacgtggtt |
8689713 |
T |
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| Q |
106 |
attctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagct |
193 |
Q |
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||||||| || ||| |||| ||||| |||||||| | || ||||| |||||||| || || ||||||||||| | |||||||||||| |
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| T |
8689714 |
attcttttaccacctcagcagagcgagaaattgttcgtgacgtgaaagaaaagctttcatacattgcccttgactatgagcaagagct |
8689801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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