View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_13 (Length: 277)
Name: NF10075_low_13
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 7006935 - 7007183
Alignment:
| Q |
19 |
agaaatcagtacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagt |
118 |
Q |
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| T |
7006935 |
agaaatcagtacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagt |
7007034 |
T |
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| Q |
119 |
cattggagagagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagat |
218 |
Q |
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| T |
7007035 |
cattggagagagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagat |
7007134 |
T |
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| Q |
219 |
tatgtaagtgtaatgtaaactatgctagagagatcaatatgtgcctatg |
267 |
Q |
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| T |
7007135 |
tatgtaagtgtaatgtaaactatgctagagagatcaatatgtgcctatg |
7007183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 7013319 - 7013547
Alignment:
| Q |
19 |
agaaatcagtacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagt |
118 |
Q |
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| T |
7013319 |
agaaatcagcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctg------gtaatgt |
7013412 |
T |
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| Q |
119 |
cattggagagagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagat |
218 |
Q |
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| T |
7013413 |
tattggagagagtccattttgactgatgataatgtatgatgatatgaataacatgatgtatttcaagtaatgttacttt------tttcttcaattaaat |
7013506 |
T |
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| Q |
219 |
tatgtaagtgtaatgtaaactatgctagagagatcaatatg |
259 |
Q |
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| T |
7013507 |
tatgtaagtttaatgtaacctgtgctacagagatcaatatg |
7013547 |
T |
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