View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_17 (Length: 250)
Name: NF10075_low_17
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 33485463 - 33485638
Alignment:
| Q |
75 |
gctcaaatctgtatccccattagggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
174 |
Q |
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| T |
33485463 |
gctcaaatctgtatccccacttgggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
33485562 |
T |
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| Q |
175 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485563 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
33485638 |
T |
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Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 33498674 - 33498849
Alignment:
| Q |
75 |
gctcaaatctgtatccccattagggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
174 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33498674 |
gctcaaatctgtatccccacttgggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
33498773 |
T |
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| Q |
175 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33498774 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
33498849 |
T |
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