View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_2 (Length: 689)
Name: NF10075_low_2
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 86 - 666
Target Start/End: Complemental strand, 40847271 - 40846690
Alignment:
| Q |
86 |
aaaggttggtgttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggaggaatacatatatagttaattgttttt |
185 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40847271 |
aaaggttggtgttaaagaaagacatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggagaaatacatatatagttaattgttttt |
40847172 |
T |
|
| Q |
186 |
ctatgcgtaaagctttatctaagaggttgaagattatggttattaagaactaccacatagatgagtgttttgatttatttatttttataataaatggatt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847171 |
ctatgcgtaaagctttatctaagaggttgaagattatggttattaagaactaccaaatagatgagtgttttgatttatttatttttataataaatggatt |
40847072 |
T |
|
| Q |
286 |
gtaaacttcccaagacatattttgttaaatgtccatcgttttatcaagtaattgtctcatgtttgagaaacttt-atagatgattttaaaagtgaaaaat |
384 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40847071 |
gtaaacttcccaagacatattttgttaaatttccatcgttttatcaagtaattgtctcatgtttgagaaacttttatagatgattttaaaagtgaaaaat |
40846972 |
T |
|
| Q |
385 |
cactgcttgaacttaattgaagtatattttatttttgaaaatgaagcatatactccataccatgtttttgttcaatacatttgttaagcttaactctttt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846971 |
cactgcttgaacttaattgaagtatattttatttttgaaaatgaagcatatactccataccatgtttttgttcaatacatttgttaagcttaactctttt |
40846872 |
T |
|
| Q |
485 |
gtttgtgtttcaaatgaattagttatagctgtcaaacatgtaaatagtttcttgaagtccttttccttcgatagtaccttagaactgagcaaccaatatt |
584 |
Q |
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| T |
40846871 |
gtttgtgtttcaaatgaattagttatagctgtcaaacatgtaaatagtttcttgaagtccttttccttcgatagtaccttagaactgagcaaccaatatt |
40846772 |
T |
|
| Q |
585 |
ggattgtaacttactgctgcaaagtgcaaacctaacaatgcaggtaaaacgaatcagctgacaagattataaagttgcgttg |
666 |
Q |
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| T |
40846771 |
ggcttgtaacttactactgcaaagtgcaaacctaacaatgcaggtaaaacgaatcagctgacaagattataaagttgcgttg |
40846690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 43 - 451
Target Start/End: Complemental strand, 40843132 - 40842733
Alignment:
| Q |
43 |
acgaagaagtggaaaggtttaatttgagtaccgatatgattgaaaaggttggtgttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaag |
142 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |
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| T |
40843132 |
acgaagaagtggaaaggtttaatttgaataccgacatgattgagaaggttggtgttaaaggaagacatgaatgttgtcaaatggttatctataatgagag |
40843033 |
T |
|
| Q |
143 |
tcttcttccaatcggaggaatacatatatagttaattgtttttctatgcgtaaagctttatctaagaggttgaagattatggttattaagaactaccac- |
241 |
Q |
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| T |
40843032 |
ccttcttcc----ggaggaatgcatg----gttaattgttttcctatgcctaaagctttatccaagaggttgaagattatggttattaggaactagtact |
40842941 |
T |
|
| Q |
242 |
--atagatgagtgttttgatttatttatttttataataaatggattgtaaacttcccaagacatattttgttaaatgtccatcgttttatcaagtaattg |
339 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
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| T |
40842940 |
aaatagatgagtgttatgatttatttatttttgtaataaatggattgtaaacttcccatgttatattttgttaaatgtccatcg-tttatcaagtaattg |
40842842 |
T |
|
| Q |
340 |
tctcatgtttgagaaactttatagatgattttaaaagtgaaaaatcactgcttgaacttaattgaagtatattttatttttgaaaatgaagcatatactc |
439 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||| |
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| T |
40842841 |
tctcatgtttgagaaactt--tagatgattataaaagtgaaaaatcactgcttgaacttaatt-atatatattttattcttgaaaacgaagcatatactt |
40842745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 40847315 - 40847265
Alignment:
| Q |
11 |
gaagcatagggatatattttatttaaatatagacgaagaagtggaaaggtt |
61 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847315 |
gaagaatagggatatattttatttaaatatagacgaagaagtggaaaggtt |
40847265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 534
Target Start/End: Original strand, 45401278 - 45401352
Alignment:
| Q |
460 |
tacatttgttaagcttaactcttttgtttgtgtttcaaatgaattagttatagctgtcaaacatgtaaatagttt |
534 |
Q |
| |
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||||||| |||||||||||| || ||| ||||||||| ||||||||||||| | |||||||||| |||||||||| |
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| T |
45401278 |
tacattttttaagcttaacttttctgtgtgtgtttcatatgaattagttattgttgtcaaacatataaatagttt |
45401352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 4041145 - 4040870
Alignment:
| Q |
96 |
gttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggaggaatacatatatagttaattgtttttctatgcgtaa |
195 |
Q |
| |
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|||||||||||| || |||||||||| | |||||||||||||||||| ||||||||||| | |||||| ||| ||| ||| |||| | || || |
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| T |
4041145 |
gttaaaggaaggtataaatgttgtcagacggttatttataatgaaagccttcttccaattgaaggaatgcatg----gttgattattttcattagcatat |
4041050 |
T |
|
| Q |
196 |
agctttatctaagaggttgaagattatggttattaagaactaccacatagatgagtgttttgatttatttatttttataataaatggattgtaaacttcc |
295 |
Q |
| |
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||||||| ||||||||||||||| ||||| ||||| ||| |||||||||||| |||||| ||||| | ||||||||||||||||||||| || |
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| T |
4041049 |
agctttacctaagaggttgaagagtatggatattaggaa--------tagatgagtgttatgatttctttatat--ataataaatggattgtaaactacc |
4040960 |
T |
|
| Q |
296 |
caagacatattttgttaaatgtccatcgttttatcaagtaattgtctcatgtttgagaaactttatagatgattttaaaagtgaaaaatcact |
388 |
Q |
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|| | ||||||||||||||||| ||||||| || || ||| | | ||||||| |||||||||| ||| ||||||| |||||||||||||| |
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| T |
4040959 |
catgtcatattttgttaaatgtgtatcgttt-attaaataaatagcccatgtttcagaaacttta--gataattttaagagtgaaaaatcact |
4040870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 46503051 - 46503118
Alignment:
| Q |
96 |
gttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggaggaat |
163 |
Q |
| |
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||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46503051 |
gttaatggaaggcatagatgtagtcaaatggttatttataatgaaagtcttcttccaattggaggaat |
46503118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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