View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_3 (Length: 457)
Name: NF10075_low_3
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 3321551 - 3321123
Alignment:
| Q |
17 |
ttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagctgcatgtagataaaccaacttattaataccttctattcctaaacatttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321551 |
ttatgctcaaaagggacaggtggataaagtcttaaggattcacataaagctgcatgtagataaaccaacttattaataccttctattcctaaacatttcc |
3321452 |
T |
|
| Q |
117 |
aattaccttctcttgatggtaaattttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
3321451 |
aattaccttctcttgatggtaaattttctttaatctcttcaagaatcttagcttcaacaaaagggtgcgtcgcgaccagccataaaaaccaagtaaggcc |
3321352 |
T |
|
| Q |
217 |
ggaactaatagtgtctgtcccggctgcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatattttccatctctcatttcattcata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
3321351 |
agaactaatagtgtctgtcccggctgcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatcttttccatctttcatttcattcata |
3321252 |
T |
|
| Q |
317 |
agggcgtttatcacgtcaaattgttgttggccttgtatttttcttttggattcgattttttcatgtaacgcttgatcaagaattttttgattcactgtat |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3321251 |
agggcgtttatcacgtcaaattgttgttggccttgtatttttcttttggattcgattttttcatataacgcttgatcaagaattttttgattctctgtat |
3321152 |
T |
|
| Q |
417 |
actttttctcttcaccaatttgaagccat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
3321151 |
actttttctcttcaccaatttgaagccat |
3321123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 36668313 - 36668744
Alignment:
| Q |
17 |
ttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagctgcatgtagataaaccaacttattaataccttctattcctaaacatttcc |
116 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||| |||||| |||||| |||||||||||| ||||| ||| ||||| ||||||||| ||||| |
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|
| T |
36668313 |
ttatgctcaaaaggtattggtggataaagccttaaggcttcacataaagctccatgtagataaattaacttgctaagcccttccattcctaaatctttcc |
36668412 |
T |
|
| Q |
117 |
aattac---cttctcttgatggtaaattttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaag |
213 |
Q |
| |
|
||||| |||||||||||| |||||||||| | | ||||||||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||| || |
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|
| T |
36668413 |
aattattatcttctcttgatgataaattttctctcacctcttcaagaatcttggcttcaacaaaagggtgtgttgccaccaaccagaaaaaccaagttag |
36668512 |
T |
|
| Q |
214 |
gccggaactaatagtgtctgtcccggctgcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatattttccatctctcatttcattc |
313 |
Q |
| |
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| | ||||| ||||| ||| | || || || |||| |||||| | || ||| ||| |||||||||||| || ||| || |||||||| | |||| | |
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| T |
36668513 |
ggcagaacttatagtatctcttccagcagcaagtagattaatcgccgtatctctcaaaaacttgtcatcaatgagattttgtccatctcctacttcaaac |
36668612 |
T |
|
| Q |
314 |
ataagggcgtttatcacgtcaaattgttgttggccttgtatttttcttttggattcgattttttcatgtaacgcttgatcaagaattttttgattcactg |
413 |
Q |
| |
|
|||||| |||| || ||||| ||||| || |||||| ||| ||||||||||| ||||| | || |||| |||||||| |||||| |||| ||| |
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| T |
36668613 |
gtaagggtatttagcaagtcaagttgtttatgtccttgtgtttctcttttggatttgatttctgaatataaccattgatcaataattttaatattctctg |
36668712 |
T |
|
| Q |
414 |
tatactttttctcttcaccaatttgaagccat |
445 |
Q |
| |
|
| |||||||||||||||||| |||||||||| |
|
|
| T |
36668713 |
aaaactttttctcttcaccaacttgaagccat |
36668744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 12175986 - 12176268
Alignment:
| Q |
17 |
ttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagctgcatgtagataaaccaacttattaataccttctattcctaaacatttcc |
116 |
Q |
| |
|
|||||||| ||||| || || |||||||| || |||| |||||| |||||| |||||| ||||| ||||| ||| |||| | ||||||| ||||| |
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|
| T |
12175986 |
ttatgctctaaaggaaccggaggataaagcctcaaggcttcacataaagctccatgtaaataaattaacttgctaagcccttttgctcctaaatctttcc |
12176085 |
T |
|
| Q |
117 |
aattaccttctcttgatggtaaattttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggcc |
216 |
Q |
| |
|
|| || |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
12176086 |
aactatgttctcttgatggtaaattttctttgatctcttcaagaatcttggcttcaacaaaagggtgtgttgccaccaaccagaaaaaccaagtaaggcc |
12176185 |
T |
|
| Q |
217 |
ggaactaatagtgtctgtcccggctgcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatattttccat |
299 |
Q |
| |
|
|| |||||||||||| | |||||||| |||| |||||| | ||| ||| ||| ||||| || |||||||||| || ||||| |
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|
| T |
12176186 |
cgagctaatagtgtctcttccggctgcaagtagattaatcgatgtatctctcaaaaactcgtagtctattggattttctccat |
12176268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 12164461 - 12164730
Alignment:
| Q |
17 |
ttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagctgcatgtagataaaccaacttattaataccttctattcctaaacatttcc |
116 |
Q |
| |
|
|||||||||||||| | || |||||||| || |||| |||||| |||||| |||||| |||||| ||||| ||| |||| | ||||||| ||||| |
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| T |
12164461 |
ttatgctcaaaaggtatcggcggataaagcctcaaggcttcacataaagctccatgtaaataaactaacttgctaagcccttttgctcctaaatctttcc |
12164560 |
T |
|
| Q |
117 |
aattaccttctcttgatggtaaattttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggcc |
216 |
Q |
| |
|
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| |
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| T |
12164561 |
aactatgttctcttgatggtaaattttctttgatctcttcaagaatcttagcttcaatcaaaggatgtgttgccaccaaccagaaaaaccaagtaaggcc |
12164660 |
T |
|
| Q |
217 |
ggaactaatagtgtctgtcccggctgcgagtaaattaattgttgtgtctttcagaaacttgtcatctatt |
286 |
Q |
| |
|
|| ||||| || ||| | ||||| || |||| ||| |||| ||| ||| ||| |||||||||||||||| |
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| T |
12164661 |
cgagctaatcgtatctcttccggcagcaagtagattgattgatgtatctctcaaaaacttgtcatctatt |
12164730 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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