View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10075_low_4 (Length: 366)

Name: NF10075_low_4
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10075_low_4
NF10075_low_4
[»] chr6 (22 HSPs)
chr6 (17-350)||(31076440-31076774)
chr6 (26-103)||(10076944-10077020)
chr6 (32-103)||(9183272-9183343)
chr6 (26-104)||(18234351-18234428)
chr6 (34-92)||(23896628-23896685)
chr6 (31-92)||(24435736-24435796)
chr6 (30-92)||(5757242-5757303)
chr6 (26-84)||(21801113-21801171)
chr6 (26-92)||(31086238-31086303)
chr6 (26-103)||(31979780-31979856)
chr6 (32-89)||(33211426-33211483)
chr6 (26-86)||(5017266-5017325)
chr6 (26-89)||(22709278-22709340)
chr6 (26-85)||(31936843-31936901)
chr6 (26-92)||(22963967-22964032)
chr6 (26-92)||(23824361-23824426)
chr6 (57-103)||(31404940-31404986)
chr6 (32-92)||(3039157-3039216)
chr6 (32-92)||(5406439-5406499)
chr6 (32-92)||(5410764-5410824)
chr6 (26-90)||(21272755-21272818)
chr6 (318-350)||(31076339-31076371)
[»] chr8 (23 HSPs)
chr8 (29-108)||(28307833-28307912)
chr8 (27-103)||(3051389-3051465)
chr8 (26-103)||(4696361-4696437)
chr8 (29-103)||(7412611-7412684)
chr8 (29-103)||(23799329-23799402)
chr8 (26-103)||(5702233-5702309)
chr8 (32-103)||(30143198-30143269)
chr8 (32-103)||(42498050-42498121)
chr8 (26-92)||(4456296-4456361)
chr8 (26-92)||(19175518-19175583)
chr8 (32-84)||(9765622-9765674)
chr8 (33-108)||(5990310-5990385)
chr8 (32-103)||(12702879-12702950)
chr8 (32-103)||(15212642-15212713)
chr8 (32-103)||(43036279-43036350)
chr8 (32-92)||(5689138-5689198)
chr8 (26-84)||(26402997-26403056)
chr8 (32-103)||(27811134-27811205)
chr8 (32-103)||(34254569-34254640)
chr8 (32-103)||(44303710-44303781)
chr8 (58-103)||(17982509-17982554)
chr8 (58-103)||(19948588-19948633)
chr8 (29-85)||(1261721-1261776)
[»] chr7 (32 HSPs)
chr7 (26-92)||(3047522-3047588)
chr7 (26-85)||(5817040-5817099)
chr7 (32-92)||(47676377-47676437)
chr7 (26-85)||(2647468-2647526)
chr7 (32-103)||(30024973-30025044)
chr7 (26-84)||(29160075-29160133)
chr7 (26-92)||(44847889-44847954)
chr7 (26-103)||(79656-79732)
chr7 (26-103)||(21989176-21989252)
chr7 (30-103)||(49091961-49092033)
chr7 (32-92)||(43864111-43864171)
chr7 (26-90)||(47263934-47263997)
chr7 (26-85)||(23402784-23402842)
chr7 (26-85)||(46516076-46516134)
chr7 (26-92)||(2479604-2479669)
chr7 (32-92)||(18126511-18126571)
chr7 (51-103)||(23554896-23554948)
chr7 (32-91)||(14070074-14070133)
chr7 (32-91)||(14380102-14380161)
chr7 (26-85)||(18413910-18413968)
chr7 (26-85)||(20284357-20284415)
chr7 (32-103)||(31733210-31733281)
chr7 (41-103)||(2761552-2761614)
chr7 (26-92)||(4796433-4796497)
chr7 (32-89)||(1113527-1113584)
chr7 (32-89)||(29990925-29990982)
chr7 (51-92)||(47674203-47674244)
chr7 (32-92)||(12098113-12098173)
chr7 (29-85)||(21640083-21640138)
chr7 (32-92)||(24526138-24526198)
chr7 (32-92)||(36146663-36146723)
chr7 (32-92)||(41317688-41317748)
[»] chr3 (45 HSPs)
chr3 (26-84)||(47649840-47649898)
chr3 (26-103)||(27974694-27974770)
chr3 (26-103)||(40592524-40592600)
chr3 (26-97)||(21711490-21711560)
chr3 (26-92)||(8370242-8370307)
chr3 (26-88)||(23410565-23410627)
chr3 (26-84)||(25796050-25796108)
chr3 (26-92)||(33386428-33386493)
chr3 (26-92)||(39032308-39032373)
chr3 (26-103)||(47923646-47923722)
chr3 (26-85)||(4386736-4386795)
chr3 (28-103)||(48438485-48438559)
chr3 (26-84)||(3715760-3715818)
chr3 (26-88)||(23392145-23392207)
chr3 (26-92)||(24694919-24694984)
chr3 (26-92)||(27038319-27038384)
chr3 (26-92)||(37725943-37726008)
chr3 (26-103)||(1736046-1736122)
chr3 (32-89)||(7764338-7764395)
chr3 (36-103)||(30709539-30709605)
chr3 (26-85)||(37466563-37466621)
chr3 (32-103)||(40734354-40734425)
chr3 (32-103)||(7762120-7762193)
chr3 (30-104)||(16264621-16264694)
chr3 (30-92)||(27026978-27027039)
chr3 (26-87)||(27986214-27986274)
chr3 (32-89)||(29812933-29812990)
chr3 (26-103)||(36029361-36029437)
chr3 (32-88)||(40735254-40735310)
chr3 (26-85)||(1306220-1306278)
chr3 (26-85)||(3328117-3328175)
chr3 (32-91)||(5236697-5236756)
chr3 (26-85)||(6794475-6794533)
chr3 (26-89)||(25929152-25929214)
chr3 (26-89)||(32143591-32143653)
chr3 (32-103)||(51398670-51398741)
chr3 (26-85)||(21353833-21353894)
chr3 (35-97)||(27453235-27453296)
chr3 (32-97)||(32744667-32744732)
chr3 (26-103)||(40844923-40844999)
chr3 (26-66)||(1417269-1417309)
chr3 (32-92)||(5260564-5260624)
chr3 (184-228)||(27305790-27305834)
chr3 (32-92)||(53921744-53921804)
chr3 (235-263)||(53921931-53921959)
[»] chr2 (29 HSPs)
chr2 (26-84)||(34682102-34682160)
chr2 (26-103)||(33528377-33528453)
chr2 (26-84)||(31056313-31056371)
chr2 (26-84)||(42269639-42269697)
chr2 (26-103)||(21630213-21630289)
chr2 (32-103)||(36988316-36988387)
chr2 (26-84)||(8040334-8040392)
chr2 (26-92)||(8389913-8389978)
chr2 (33-91)||(12632959-12633017)
chr2 (26-92)||(28258941-28259006)
chr2 (26-103)||(14698762-14698838)
chr2 (26-103)||(36757515-36757591)
chr2 (26-85)||(33118403-33118461)
chr2 (32-103)||(39284741-39284812)
chr2 (26-92)||(20522490-20522555)
chr2 (26-83)||(2837799-2837856)
chr2 (26-79)||(2869468-2869521)
chr2 (26-103)||(34389119-34389195)
chr2 (40-92)||(2334666-2334718)
chr2 (31-103)||(23078224-23078295)
chr2 (32-103)||(6595247-6595318)
chr2 (26-85)||(13569597-13569655)
chr2 (40-103)||(38312096-38312159)
chr2 (32-86)||(4560967-4561021)
chr2 (26-92)||(17865473-17865537)
chr2 (32-86)||(36318250-36318304)
chr2 (32-104)||(29867724-29867796)
chr2 (26-83)||(40739102-40739158)
chr2 (32-92)||(36773416-36773476)
[»] scaffold0087 (2 HSPs)
scaffold0087 (26-103)||(36585-36661)
scaffold0087 (26-92)||(43725-43790)
[»] chr4 (38 HSPs)
chr4 (26-103)||(5268953-5269029)
chr4 (32-103)||(26175877-26175948)
chr4 (26-92)||(3777817-3777882)
chr4 (26-92)||(54867447-54867512)
chr4 (30-103)||(10047653-10047725)
chr4 (26-103)||(16623046-16623122)
chr4 (32-103)||(52082898-52082969)
chr4 (32-103)||(52093905-52093976)
chr4 (32-103)||(56178877-56178948)
chr4 (26-84)||(3793849-3793907)
chr4 (26-84)||(24334081-24334139)
chr4 (26-103)||(5396424-5396500)
chr4 (26-103)||(8689249-8689325)
chr4 (32-89)||(12745677-12745734)
chr4 (32-91)||(9927698-9927757)
chr4 (32-103)||(30000046-30000117)
chr4 (40-103)||(52095611-52095674)
chr4 (26-92)||(5112505-5112571)
chr4 (30-84)||(6542421-6542475)
chr4 (29-103)||(36314983-36315056)
chr4 (29-103)||(36329192-36329265)
chr4 (26-92)||(38152201-38152267)
chr4 (26-84)||(51336938-51336996)
chr4 (26-103)||(5143528-5143604)
chr4 (32-101)||(5429537-5429606)
chr4 (26-103)||(16628625-16628701)
chr4 (26-103)||(25861786-25861862)
chr4 (32-104)||(48142896-48142969)
chr4 (161-305)||(1982820-1982962)
chr4 (26-85)||(1983070-1983129)
chr4 (29-92)||(6743179-6743241)
chr4 (32-103)||(37740482-37740553)
chr4 (30-92)||(31985397-31985458)
chr4 (32-89)||(12739791-12739848)
chr4 (32-89)||(12747997-12748054)
chr4 (32-85)||(29254368-29254421)
chr4 (26-103)||(42599328-42599403)
chr4 (32-92)||(46147596-46147656)
[»] chr5 (24 HSPs)
chr5 (32-103)||(28750896-28750967)
chr5 (26-84)||(10282022-10282080)
chr5 (26-103)||(14520498-14520574)
chr5 (26-85)||(28832525-28832583)
chr5 (32-103)||(42428671-42428742)
chr5 (33-103)||(39468791-39468861)
chr5 (26-103)||(11916725-11916801)
chr5 (26-103)||(17003712-17003788)
chr5 (32-103)||(13488059-13488130)
chr5 (32-103)||(42426476-42426547)
chr5 (26-84)||(3880570-3880628)
chr5 (26-92)||(7160667-7160733)
chr5 (26-88)||(9353100-9353161)
chr5 (26-92)||(11181596-11181661)
chr5 (26-92)||(15464802-15464867)
chr5 (26-103)||(12083930-12084006)
chr5 (32-103)||(30683161-30683232)
chr5 (26-85)||(38219670-38219728)
chr5 (57-103)||(25412618-25412664)
chr5 (58-103)||(13342917-13342962)
chr5 (58-103)||(30182445-30182490)
chr5 (58-103)||(36074311-36074356)
chr5 (32-108)||(13695945-13696021)
chr5 (35-103)||(37439004-37439072)
[»] chr1 (38 HSPs)
chr1 (26-84)||(19073198-19073256)
chr1 (26-84)||(19121088-19121146)
chr1 (26-84)||(40816585-40816643)
chr1 (26-84)||(47703704-47703762)
chr1 (26-103)||(21536323-21536399)
chr1 (26-103)||(29652081-29652157)
chr1 (32-103)||(31659094-31659165)
chr1 (26-88)||(26644666-26644727)
chr1 (26-103)||(13598668-13598744)
chr1 (26-103)||(47102592-47102668)
chr1 (32-92)||(28220467-28220527)
chr1 (32-92)||(28223662-28223722)
chr1 (32-103)||(1833378-1833449)
chr1 (32-103)||(3156722-3156793)
chr1 (32-103)||(3189187-3189258)
chr1 (32-103)||(3198004-3198075)
chr1 (32-103)||(3206843-3206914)
chr1 (32-103)||(10925079-10925150)
chr1 (26-105)||(27104153-27104231)
chr1 (26-92)||(37070035-37070100)
chr1 (29-103)||(47098578-47098651)
chr1 (26-103)||(3281975-3282051)
chr1 (26-103)||(9022659-9022735)
chr1 (58-103)||(20762528-20762573)
chr1 (192-264)||(9022516-9022588)
chr1 (32-92)||(49918216-49918276)
chr1 (26-85)||(19358611-19358669)
chr1 (26-85)||(19366075-19366133)
chr1 (26-85)||(32889706-32889764)
chr1 (32-103)||(37503795-37503866)
chr1 (26-92)||(13604386-13604451)
chr1 (26-83)||(22819699-22819756)
chr1 (32-92)||(13138215-13138275)
chr1 (29-85)||(24202536-24202591)
chr1 (32-92)||(28265807-28265867)
chr1 (67-103)||(30476724-30476760)
chr1 (32-92)||(45644596-45644656)
chr1 (32-92)||(50167429-50167489)
[»] scaffold0036 (1 HSPs)
scaffold0036 (26-103)||(85951-86027)
[»] scaffold0148 (1 HSPs)
scaffold0148 (26-84)||(11001-11059)
[»] scaffold0006 (2 HSPs)
scaffold0006 (26-103)||(5953-6029)
scaffold0006 (26-92)||(133043-133108)
[»] scaffold0140 (1 HSPs)
scaffold0140 (26-92)||(8181-8246)
[»] scaffold0477 (1 HSPs)
scaffold0477 (26-83)||(5728-5785)
[»] scaffold0016 (1 HSPs)
scaffold0016 (32-92)||(114457-114517)
[»] scaffold0098 (1 HSPs)
scaffold0098 (33-92)||(45474-45532)
[»] scaffold0066 (1 HSPs)
scaffold0066 (32-103)||(20656-20727)
[»] scaffold0188 (2 HSPs)
scaffold0188 (29-85)||(17719-17774)
scaffold0188 (29-85)||(23812-23867)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 31076774 - 31076440
Alignment:
Q  17 aaggcaacgtcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaatgaatcgtgaaa 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  31076774 aaggcaacgtcactacaaagacactcaaccctatagttatctcctttgtattcccaagtttctttctcttcaaactttctttcaaaaatgaattgtgaaa 31076675  T
Q  117 gtgtaaatagtaccttgtaacaatcaaaattgtcacatttagtcaaatcatgtcatgatt-cgtaacatacgatctaaggtacacaaatcttatgcacaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31076674 gtgtaaatagtaccttgtaacaatcaaaattgtcacatttagtcaaatcatgtcatgatttcgtaacatacgatctaaggtacacaaatcttatgcacaa 31076575  T
Q  216 attgtatcacgatggccacaaatcgtgtcacgattttcctccaaaaaactccatgttcattgcctatgaaatcgtgtcacgccatccaaattgtcaaaac 315  Q
    || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  31076574 atcgtgtcacgatagccacaaatcgtgtcacgattttcctccaaaaaactccatgttcattgcctataaaatcgtgtcacgccatccaaattatcaaaac 31076475  T
Q  316 aattacaactgatagaacaataataatgtacaatg 350  Q
    ||||||||||||||| |||||||||||||| ||||    
T  31076474 aattacaactgataggacaataataatgtataatg 31076440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 10077020 - 10076944
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||| ||||| || |||||||    
T  10077020 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttaaagctctccttcaaaa 10076944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 9183272 - 9183343
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  9183272 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 9183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 18234351 - 18234428
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaa 104  Q
    |||||||||||||||||||| ||| || || |||||||||| | |||||||||| |||||||||||| || ||||||||    
T  18234351 tcactacaaagacactcaaccctaaagctacctcctttgtaat-ccaagtttctttctcttcaagctctccttcaaaaa 18234428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 23896628 - 23896685
Alignment:
Q  34 aagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||||    
T  23896628 aagacactcaactctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 23896685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 24435796 - 24435736
Alignment:
Q  31 acaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||||||||||| ||| |||||||||||||||| | || ||||||||||||||||||||    
T  24435796 acaaagacactcaaccctaaagttatctcctttgtaat-cctagtttctctctcttcaagct 24435736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 5757303 - 5757242
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||| ||||    
T  5757303 tacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttccagct 5757242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 21801171 - 21801113
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||  ||||| || |||||||||| ||||||||||||||    
T  21801171 tcactacaaagacactcaaccctcaagttacctgctttgtattctcaagtttctctctc 21801113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 31086303 - 31086238
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| | |||||||| | |||||||||||||||||| ||||    
T  31086303 tcactacaaagacactcaaccctaaagttaccccctttgtaat-ccaagtttctctctcttccagct 31086238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 31979780 - 31979856
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||| | | ||||||||||||||||  ||||| ||| ||||||    
T  31979780 tcactacaaagacactcaaccctaaagttacctcctttgcagt-ccaagtttctctctctaaaagctctctctcaaaa 31979856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 33211426 - 33211483
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| ||||||| || ||||| ||||||||  |||||||||||||||||||||||    
T  33211426 caaagaccctcaactgtaaagttacctcctttgatttcccaagtttctctctcttcaa 33211483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 5017325 - 5017266
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctctt 86  Q
    |||||||||||||||||||| ||| ||||||||| |||||| | |||||||||||| ||||    
T  5017325 tcactacaaagacactcaaccctaaagttatctcgtttgtaat-ccaagtttctctttctt 5017266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 22709278 - 22709340
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | |||||||| |||||||||||    
T  22709278 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttttctctcttcaa 22709340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 31936843 - 31936901
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| |||||||| | | ||||||||||||||||    
T  31936843 tcactacaaagacactcaaccctaaagttacctcctttgcaat-ccaagtttctctctct 31936901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 22963967 - 22964032
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| ||| |||||| | | |||||||||||| ||||||||    
T  22963967 tcactacaaagacactcaaccctaaagttagctcttttgtaat-caaagtttctctcttttcaagct 22964032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 23824426 - 23824361
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| ||| |||||| | | |||||||||||| ||||||||    
T  23824426 tcactacaaagacactcaaccctaaagttagctcttttgtaat-caaagtttctctcttttcaagct 23824361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 31404940 - 31404986
Alignment:
Q  57 ctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||  |||||||||||||||||||||||||| || |||||||    
T  31404940 ctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 31404986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 3039157 - 3039216
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| |||||||| |||||||||||| |||||||| |||||    
T  3039157 caaagaccctcaaccctaaagttacctcctttg-attcccaagtttttctctcttgaagct 3039216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 5406439 - 5406499
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| || ||| ||| ||||  ||||||||  ||||||||||||||||||||||||||    
T  5406439 caaagaccctaaaccctaaagttgcctcctttgatttcccaagtttctctctcttcaagct 5406499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 5410764 - 5410824
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| || ||| ||| ||||  ||||||||  ||||||||||||||||||||||||||    
T  5410764 caaagaccctaaaccctaaagttgcctcctttgatttcccaagtttctctctcttcaagct 5410824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 21272818 - 21272755
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaag 90  Q
    |||||||||||||||||||| ||| ||||| | |||||||| | | ||||||||||| |||||||    
T  21272818 tcactacaaagacactcaaccctaaagttaccccctttgtaat-caaagtttctctcacttcaag 21272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 31076371 - 31076339
Alignment:
Q  318 ttacaactgatagaacaataataatgtacaatg 350  Q
    ||||||||||||||| |||||||||||||||||    
T  31076371 ttacaactgatagaataataataatgtacaatg 31076339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 28307833 - 28307912
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaatgaa 108  Q
    ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||| || ||||||||||||    
T  28307833 ctacaaagacactcaactctaaagttacctcctttgtaatcctaagtttctctctcttcaagctctcattcaaaaatgaa 28307912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 3051389 - 3051465
Alignment:
Q  27 cactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||| ||||||||||    
T  3051389 cactacaaagacactcaaccctaaagttctctcctttatagtcccaagtttctctctcttcaagctctctttcaaaa 3051465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 4696437 - 4696361
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||| || |||||||    
T  4696437 tcactacaaagacactcaaccctaaagttatctcctttgtaat-ccaagtttctctctcttcaagctctccttcaaaa 4696361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 7412611 - 7412684
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  7412611 ctacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctccttcaaaa 7412684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 23799402 - 23799329
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||||||||||||| || |||||||    
T  23799402 ctacaaagacactcaaccctaaagttacctcctttgtaatcc-aagtttctctctcttcaagctatccttcaaaa 23799329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 5702309 - 5702233
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||| || || |||||||    
T  5702309 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaacctctccttcaaaa 5702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 30143269 - 30143198
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  30143269 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 30143198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42498121 - 42498050
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  42498121 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 42498050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 4456296 - 4456361
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||| ||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||    
T  4456296 tcactacagagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 4456361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 19175583 - 19175518
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| |||||||||    
T  19175583 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctcacttcaagct 19175518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9765674 - 9765622
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  9765674 caaagacactcaaccctcaagttacctcctttgtattcccaagtttctctctc 9765622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 5990385 - 5990310
Alignment:
Q  33 aaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaatgaa 108  Q
    ||||||||||||| ||| ||||| |  ||||||||| |||||||||||||||||| |||| || || |||||||||    
T  5990385 aaagacactcaaccctaaagttaccgtctttgtatttccaagtttctctctcttctagctctccttaaaaaatgaa 5990310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 12702879 - 12702950
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| | ||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  12702879 caaagaccctcaaccctaaatttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 12702950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 15212713 - 15212642
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||| ||||  |||||||||||||||||||||||||| || |||||||    
T  15212713 caaagaccctcaaccctaaagttacctcatttgatttcccaagtttctctctcttcaagctctccttcaaaa 15212642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 43036350 - 43036279
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||||| || || |||||||    
T  43036350 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaacctctcattcaaaa 43036279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 5689198 - 5689138
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||||||||||||  ||||| |||||||||||||| |||||    
T  5689198 caaagaccctcaaccctaaagttatctcctttgatttccctagtttctctctcttgaagct 5689138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 26403056 - 26402997
Alignment:
Q  26 tcactacaaagacactcaactctata-gttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||| | |||| |||||||||||||| | |||||||||||    
T  26403056 tcactacaaagacactcaaccctaaaagttacctcctttgtattcctaggtttctctctc 26402997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 27811205 - 27811134
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| | ||| ||||||||  ||||||| ||||||||||||| ||||||| |||||||    
T  27811205 caaagaccctcaaccctaaatttacctcctttgatttcccaattttctctctcttccagctttccttcaaaa 27811134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 34254569 - 34254640
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| || ||| ||| ||||  ||||||||  |||||||||||||||||||||||||| || |||||||    
T  34254569 caaagaccctaaaccctaaagttgcctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 34254640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 44303781 - 44303710
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| || ||| ||| |||| | |||||||  ||| |||||||||||||||||||||| ||||||||||    
T  44303781 caaagaccctaaaccctaaagttgtttcctttgatttctcaagtttctctctcttcaagctctctttcaaaa 44303710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 17982554 - 17982509
Alignment:
Q  58 tcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  |||||||||||||||||||||||||| || |||||||    
T  17982554 tcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 17982509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 19948588 - 19948633
Alignment:
Q  58 tcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  |||||||||||||||||||||||||| || |||||||    
T  19948588 tcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 19948633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 1261776 - 1261721
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  1261776 ctacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 1261721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 3047522 - 3047588
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||| |||||    
T  3047522 tcactacaaagacactcaaccctaaagttacctcctttgtaatcccaagtttctctctcttaaagct 3047588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 5817099 - 5817040
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||    
T  5817099 tcactacaaagacactcaaccataaagttacctcctttgtattcccaagtttctctctct 5817040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 47676377 - 47676437
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||||||||||||  ||||||||||||||||||||||||||    
T  47676377 caaagaccctcaaccctaaagttatctcctttgatttcccaagtttctctctcttcaagct 47676437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 2647526 - 2647468
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  2647526 tcactacaaagacactcaaccctaaagttatctcctttgtagt-ccaagtttctctctct 2647468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 30024973 - 30025044
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  30024973 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctcattcaaaa 30025044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 29160075 - 29160133
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||||    
T  29160075 tcactataaagacactcaacccaaaagttacctcctttgtattcccaagtttctctctc 29160133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 44847954 - 44847889
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| ||||||| || | |||||||||||||||||||||||    
T  44847954 tcactacaaagacactcaaccctaaagttacctcctttataat-ccaagtttctctctcttcaagct 44847889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 79656 - 79732
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||   || ||||| |||||||||| ||| ||||||||||||||||||||| || |||||||    
T  79656 tcactacaaagacactcaatcttaaagttacctcctttgtaatcc-aagtttctctctcttcaagctctccttcaaaa 79732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 21989176 - 21989252
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||  ||| ||||| |||||||||| | ||||||||||||| ||||||||| || |||||||    
T  21989176 tcactacaaagacactcaaacctaaagttacctcctttgtaat-ccaagtttctctcacttcaagctctccttcaaaa 21989252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 49091961 - 49092033
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||  || ||||| |||||||||| ||| ||||||||||||||||||||| || |||||||    
T  49091961 tacaaagacactcaaccttaaagttacctcctttgtaatcc-aagtttctctctcttcaagctctccttcaaaa 49092033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 43864171 - 43864111
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||    
T  43864171 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagct 43864111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 47263934 - 47263997
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaag 90  Q
    |||||||||||||||||||| ||| ||||| ||||||| || | |||||||||||||||||||||    
T  47263934 tcactacaaagacactcaaccctaaagttacctcctttataat-ccaagtttctctctcttcaag 47263997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 23402842 - 23402784
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||    
T  23402842 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctct 23402784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 46516134 - 46516076
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||    
T  46516134 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctct 46516076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 2479604 - 2479669
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||| ||||||||||||| ||| ||||  |||||||||| ||| |||||||||||||||||||||    
T  2479604 tcactataaagacactcaaccctaaagttccctcctttgtaatcc-aagtttctctctcttcaagct 2479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 18126571 - 18126511
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||| ||||||||    
T  18126571 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctattcaagct 18126511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 23554948 - 23554896
Alignment:
Q  51 agttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  23554948 agttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 23554896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 14070074 - 14070133
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagc 91  Q
    ||||||| |||| | ||| ||||| ||||||||  |||||||||||||||||||||||||    
T  14070074 caaagaccctcagccctaaagttacctcctttgatttcccaagtttctctctcttcaagc 14070133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 14380102 - 14380161
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagc 91  Q
    ||||||| |||| | ||| ||||| ||||||||  |||||||||||||||||||||||||    
T  14380102 caaagaccctcagccctaaagttacctcctttgatttcccaagtttctctctcttcaagc 14380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 18413910 - 18413968
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  18413910 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 18413968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 20284357 - 20284415
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| ||||||| || | ||||||||||||||||    
T  20284357 tcactacaaagacactcaaccctaaagttacctcctttataat-ccaagtttctctctct 20284415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 31733210 - 31733281
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||||||| ||||| ||| ||||  ||| ||||||||||||||||| ||||||  |||||||    
T  31733210 caaagaccctcaactctaaagttacctcttttgatttctcaagtttctctctcttccagcttttcttcaaaa 31733281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 2761552 - 2761614
Alignment:
Q  41 tcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||| ||| ||||| ||||||||  ||||||||||| |||||||||||||| || |||||||    
T  2761552 tcaaccctaaagttacctcctttgatttcccaagtttatctctcttcaagctctccttcaaaa 2761614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 4796497 - 4796433
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| || ||||||    
T  4796497 tcactacaaagacactcaac-ctaaagttacctcctttgtaat-ccaagtttctctcactccaagct 4796433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 1113584 - 1113527
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| |||||| ||| |||||  |||||||  |||||||||||||||||||||||    
T  1113584 caaagaccctcaaccctaaagttacttcctttgatttcccaagtttctctctcttcaa 1113527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 29990982 - 29990925
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| || ||| ||| |||| |||||||||  |||||||||||||||||||||||    
T  29990982 caaagaccctaaaccctaaagttgtctcctttgatttcccaagtttctctctcttcaa 29990925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 47674203 - 47674244
Alignment:
Q  51 agttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||| ||||||||  ||||||||||||||||||||||||||    
T  47674203 agttacctcctttgatttcccaagtttctctctcttcaagct 47674244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 12098113 - 12098173
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||| |||||||| |||||    
T  12098113 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctcttgaagct 12098173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 21640083 - 21640138
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  21640083 ctacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 21640138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 24526138 - 24526198
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||||||||||||  ||||| ||||| |||||||| |||||    
T  24526138 caaagaccctcaaccctaaagttatctcctttgatttccctagtttttctctcttgaagct 24526198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 36146663 - 36146723
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||| |||||||| |||||    
T  36146663 caaagaccctcaacactaaagttacctcctttgatttcccaagtttttctctcttgaagct 36146723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 41317688 - 41317748
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||| |||||||||||||| |||||    
T  41317688 caaagaccctcaaccctaaagttacctcctttgatttccctagtttctctctcttgaagct 41317748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 47649840 - 47649898
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  47649840 tcactacaaagacactcaaccctaaagttatctcctttgtattcccaagtttctatctc 47649898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 27974770 - 27974694
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  27974770 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctccttcaaaa 27974694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 40592600 - 40592524
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  40592600 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctcattcaaaa 40592524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 21711490 - 21711560
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctt 97  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| ||||    
T  21711490 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctctt 21711560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 8370307 - 8370242
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||    
T  8370307 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 8370242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 23410565 - 23410627
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttca 88  Q
    |||||||||||||||||||| ||| |||| ||||||||| | |||||||||||||||||||||    
T  23410565 tcactacaaagacactcaaccctaaagttctctcctttgcaatcccaagtttctctctcttca 23410627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 25796050 - 25796108
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  25796050 tcactacaaagacactcaaccctcaagttacctcctttgtattcccaagtttctctctc 25796108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 33386493 - 33386428
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| |||| ||||||||||| | |||||||||||||||||||||||    
T  33386493 tcactacaaagacactcaaccctaaagttctctcctttgtaat-ccaagtttctctctcttcaagct 33386428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 39032373 - 39032308
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||    
T  39032373 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 39032308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 47923722 - 47923646
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||  ||| ||||| |||||||||| ||| ||||||||||||||||||||| || |||||||    
T  47923722 tcactacaaagacactcaatcctaaagttacctcctttgtaatcc-aagtttctctctcttcaagctctccttcaaaa 47923646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 4386795 - 4386736
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||  |||||||||||||||    
T  4386795 tcactacaaagacactcaaccctaaagttacctcctttgtattttcaagtttctctctct 4386736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 48438485 - 48438559
Alignment:
Q  28 actacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||| |||||||| || |||||||    
T  48438485 actacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctattcaagctctccttcaaaa 48438559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 3715818 - 3715760
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||    
T  3715818 tcactacaaagacattcaaccctaaagttacctcctttgtattctcaagtttctctctc 3715760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 23392145 - 23392207
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttca 88  Q
    |||||||||||||||||||| ||| | || ||||||||| | |||||||||||||||||||||    
T  23392145 tcactacaaagacactcaaccctaaatttctctcctttgcagtcccaagtttctctctcttca 23392207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 24694984 - 24694919
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||| ||||||||||||||||||    
T  24694984 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaaatttctctctcttcaagct 24694919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 27038319 - 27038384
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||||||| |||||||| ||| |||||||||||||||| | |||||||| ||||||||||||||    
T  27038319 tcactacaaaggcactcaaccctaaagttatctcctttgtaat-ccaagtttttctctcttcaagct 27038384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 37725943 - 37726008
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | |||||||||||||||||||||||    
T  37725943 tcactacaaagacactcaaccctaaagtttcctcctttgtaat-ccaagtttctctctcttcaagct 37726008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 1736122 - 1736046
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||| ||| || || |||||||    
T  1736122 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctctccaaactctccttcaaaa 1736046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 7764395 - 7764338
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| |||||||||| ||||| ||||||||  |||||||||||||||||||||||    
T  7764395 caaagaccctcaactctaaagttacctcctttgatttcccaagtttctctctcttcaa 7764338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 30709605 - 30709539
Alignment:
Q  36 gacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||| ||||| |||||||||| | |||||||||| |||||||||||| || |||||||    
T  30709605 gacactcaactctaaagttacctcctttgtaat-ccaagtttctgtctcttcaagctctccttcaaaa 30709539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 37466563 - 37466621
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||| ||||| ||||| |||||||||| | ||||||||||||||||    
T  37466563 tcactacaaagacactcagctctaaagttacctcctttgtaat-ccaagtttctctctct 37466621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 40734425 - 40734354
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||||||||||||  || |||||||||| |||||||||||| || |||||||    
T  40734425 caaagaccctcaaccctaaagttatctcctttgattttccaagtttctgtctcttcaagctctccttcaaaa 40734354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 7762193 - 7762120
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctct--ctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||  |||||||||||||| |||||||    
T  7762193 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctctcttcaagctttccttcaaaa 7762120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 16264621 - 16264694
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaa 104  Q
    |||||||||||||||| ||| ||||| |||||||||| | ||||||||||||  ||||||||| || ||||||||    
T  16264621 tacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctcttacttcaagctctccttcaaaaa 16264694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 27026978 - 27027039
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||| ||| ||||| |||||||||| | |||||||| ||||||||||||||    
T  27026978 tacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttttctctcttcaagct 27027039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 27986274 - 27986214
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttc 87  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||||    
T  27986274 tcactacaaagacactcaaccctaaagttccctcctttgtaat-ccaagtttctctctcttc 27986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 29812990 - 29812933
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||    
T  29812990 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaa 29812933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 36029361 - 36029437
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| | ||| |||||||||| | ||||||||||||  ||||||||| || |||||||    
T  36029361 tcactacaaagacactcaaccctaaatttacctcctttgtaat-ccaagtttctcttacttcaagctctccttcaaaa 36029437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 40735310 - 40735254
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttca 88  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||||    
T  40735310 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttca 40735254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 1306220 - 1306278
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||||||| ||||  ||||||| || | ||||||||||||||||    
T  1306220 tcactacaaagacactcaactctagagttccctcctttataat-ccaagtttctctctct 1306278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 3328175 - 3328117
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||| ||||| ||| ||||||||||||| || | ||||||||||||||||    
T  3328175 tcactacaaagacattcaaccctaaagttatctcctttctaat-ccaagtttctctctct 3328117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 5236697 - 5236756
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagc 91  Q
    ||||||| |||||| ||| ||||| |||||| |  |||||||||||||||||||||||||    
T  5236697 caaagaccctcaaccctaaagttacctccttcgatttcccaagtttctctctcttcaagc 5236756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 6794533 - 6794475
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||| |||||||||| ||| ||||| |||||||||| ||| ||||||||||||||    
T  6794533 tcactacaatgacactcaaccctaaagttacctcctttgtaatcc-aagtttctctctct 6794475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 25929214 - 25929152
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | | ||||||||||| ||||||    
T  25929214 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ctaagtttctctcacttcaa 25929152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 32143591 - 32143653
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | |||| |||||||||||||||    
T  32143591 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaaatttctctctcttcaa 32143653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 51398741 - 51398670
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||| ||||||||| || || |||||||    
T  51398741 caaagactctcaaccctaaagttacctcctttgatttcccaagtttctatctcttcaacctctccttcaaaa 51398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 21353833 - 21353894
Alignment:
Q  26 tcactacaaagacactcaa--ctctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||  | ||| ||||| |||||||||||||| | ||||||||||||    
T  21353833 tcactacaaagacactcaaaaccctaaagttacctcctttgtattcctaggtttctctctct 21353894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 27453235 - 27453296
Alignment:
Q  35 agacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctt 97  Q
    ||||||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||| ||||    
T  27453235 agacactcaaccctaaagttccctcctttgtaatcc-aagtttctctctcttcaagctctctt 27453296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 32744667 - 32744732
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctt 97  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||| |||||||| ||||| ||||    
T  32744667 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctcttgaagctctctt 32744732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 40844923 - 40844999
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | | |||||||||| |||| || || || |||||||    
T  40844923 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ctaagtttctctatcttaaaactctccttcaaaa 40844999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 1417309 - 1417269
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgta 66  Q
    |||||||||||||||||||| ||| ||||| ||||||||||    
T  1417309 tcactacaaagacactcaaccctaaagttacctcctttgta 1417269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 5260564 - 5260624
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| || ||| ||| ||||  ||||||||  ||||||||||||||||||||||||||    
T  5260564 caaagaccctaaaccctaaagttgcctcctttgatttcccaagtttctctctcttcaagct 5260624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 27305790 - 27305834
Alignment:
Q  184 tacgatctaaggtacacaaatcttatgcacaaattgtatcacgat 228  Q
    ||||||| |||||||||||||||||| ||||||| || |||||||    
T  27305790 tacgatccaaggtacacaaatcttatccacaaatcgtgtcacgat 27305834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 53921744 - 53921804
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||| ||||  ||||||||||| ||||||||||||||    
T  53921744 caaagactctcaaccctaaagttacctcatttgatttcccaagtttttctctcttcaagct 53921804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 53921931 - 53921959
Alignment:
Q  235 aaatcgtgtcacgattttcctccaaaaaa 263  Q
    |||||||||||||||||||||||||||||    
T  53921931 aaatcgtgtcacgattttcctccaaaaaa 53921959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 34682160 - 34682102
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  34682160 tcactacaaagacactcaaccctaaagttacctcctttgtattcccaagtttctctctc 34682102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 33528453 - 33528377
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  33528453 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctccttcaaaa 33528377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 31056313 - 31056371
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  31056313 tcactacaaagacactcaaccctcaagttacctcctttgtattcccaagtttctctctc 31056371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 42269639 - 42269697
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    ||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  42269639 tcactacaaagacactcaaccttaaagttacctcctttgtattcccaagtttctctctc 42269697  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 21630213 - 21630289
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| ||||||||| || |||||||    
T  21630213 tcactacaaagacactcaacactaaagttacctcctttgtaat-ccaagtttctctcccttcaagctctccttcaaaa 21630289  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 36988316 - 36988387
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  36988316 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 36988387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 8040334 - 8040392
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    ||||||||||||||||||||  || ||||| |||||||||||| |||||||||||||||    
T  8040334 tcactacaaagacactcaaccataaagttacctcctttgtattaccaagtttctctctc 8040392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 8389978 - 8389913
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||||||||| |||||| ||| |||||||||||||||| | |||||||||||||||||| ||||    
T  8389978 tcactacaaagaccctcaaccctaaagttatctcctttgtaat-ccaagtttctctctcttccagct 8389913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 12632959 - 12633017
Alignment:
Q  33 aaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagc 91  Q
    ||||||||||||| ||| ||||||||||||||  |||||||||||||||||||| ||||    
T  12632959 aaagacactcaaccctaaagttatctcctttggtttcccaagtttctctctcttgaagc 12633017  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 28259006 - 28258941
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||| ||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||    
T  28259006 tcactataaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 28258941  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 14698838 - 14698762
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||  ||||| || |||||||    
T  14698838 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctctaaaagctctccttcaaaa 14698762  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 36757591 - 36757515
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| |  |||||||||||| ||||||||| || |||||||    
T  36757591 tcactacaaagacactcaaccctaaagttacctcctttgtaat-tcaagtttctctcacttcaagctctccttcaaaa 36757515  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 33118403 - 33118461
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||    
T  33118403 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctct 33118461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 39284812 - 39284741
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||||| || || |||||||    
T  39284812 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaacctctccttcaaaa 39284741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 20522490 - 20522555
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | | |||||||||||||| ||||||    
T  20522490 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ctaagtttctctctctccaagct 20522555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 2837856 - 2837799
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctct 83  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||  | ||||||||||    
T  2837856 tcactacaaagacactcaaccctaaagttacctcctttgtattcttaggtttctctct 2837799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 2869521 - 2869468
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttct 79  Q
    ||||||||||||||||||||  || ||||||||||||||||||  |||||||||    
T  2869521 tcactacaaagacactcaaccgtaaagttatctcctttgtattttcaagtttct 2869468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 34389119 - 34389195
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||| |||| ||| ||||| |||||||||| | ||||||||||||| | ||||||| || |||||||    
T  34389119 tcactacaaagacacacaaccctaaagttacctcctttgtaat-ccaagtttctctcacatcaagctctccttcaaaa 34389195  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 2334666 - 2334718
Alignment:
Q  40 ctcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||    
T  2334666 ctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagct 2334718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 23078295 - 23078224
Alignment:
Q  31 acaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||| | | ||||| |||||||||| ||| ||||||||||| ||||||||| || |||||||    
T  23078295 acaaagacactcaacccaaaagttacctcctttgtaatcc-aagtttctctcacttcaagctctccttcaaaa 23078224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 6595247 - 6595318
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||| ||||  |||| ||||||||||||||||||||| || |||||||    
T  6595247 caaagaccctcaaccctaaagttacctcatttgatttcctaagtttctctctcttcaagctctccttcaaaa 6595318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 13569597 - 13569655
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||| ||| ||| ||||||||| |||||| | ||||||||||||||||    
T  13569597 tcactacaaagacacttaaccctaaagttatctcatttgtaat-ccaagtttctctctct 13569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 38312159 - 38312096
Alignment:
Q  40 ctcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||| ||| ||||| ||||||||  ||||||| |||||||||||||||||| || |||||||    
T  38312159 ctcaaccctaaagttacctcctttgatttcccaaatttctctctcttcaagctctccttcaaaa 38312096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 4561021 - 4560967
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctctt 86  Q
    |||||||||||||||||| ||||||||||| ||  |||| |||||| ||||||||    
T  4561021 caaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 4560967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 17865473 - 17865537
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||| |||| ||||||||||||    
T  17865473 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaag-ttctgtctcttcaagct 17865537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 36318250 - 36318304
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctctt 86  Q
    |||||||| ||||| ||| ||||| ||||||||  ||||||||||||||||||||    
T  36318250 caaagacattcaaccctaaagttacctcctttgatttcccaagtttctctctctt 36318304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 29867796 - 29867724
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaa-gtttctctctcttcaagctttctttcaaaaa 104  Q
    ||||||| |||||| | ||||||| || ||||| |||||||| ||||||||||||| ||||| |||||||||||    
T  29867796 caaagaccctcaacccaatagttaccttctttg-attcccaaagtttctctctctttaagctctctttcaaaaa 29867724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 40739102 - 40739158
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctct 83  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||    
T  40739102 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctct 40739158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 36773476 - 36773416
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||| |||||||||||||| |||||    
T  36773476 caaagaccctcaaccctaaagttacctcctttgatttccctagtttctctctcttgaagct 36773416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 36661 - 36585
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  36661 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctccttcaaaa 36585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 43790 - 43725
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||| ||||    
T  43790 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttccagct 43725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 5269029 - 5268953
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  5269029 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagctctccttcaaaa 5268953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 26175877 - 26175948
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||||||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  26175877 caaagaccctcaactctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 26175948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 3777817 - 3777882
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||    
T  3777817 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 3777882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 54867447 - 54867512
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||    
T  54867447 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttcaagct 54867512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 10047653 - 10047725
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||||||||||||| || |||||||    
T  10047653 tacaaagacactcaaccctaaagttacctcctttgtaatcc-aagtttctctctcttcaagctctccttcaaaa 10047725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 16623122 - 16623046
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||| |||| || |||||||    
T  16623122 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctcttctagctctccttcaaaa 16623046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 52082898 - 52082969
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  52082898 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctgtccttcaaaa 52082969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 52093905 - 52093976
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  52093905 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctgtccttcaaaa 52093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 56178877 - 56178948
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  ||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| ||||||||||    
T  56178877 caaagaccttcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctctttcaaaa 56178948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 3793907 - 3793849
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||    
T  3793907 tcactataaagacactcaaccctaaagttacctcctttatattcccaagtttctctctc 3793849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 24334081 - 24334139
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    ||||||||||||| |||||| ||| ||||| || |||||||||||||||||||||||||    
T  24334081 tcactacaaagactctcaaccctaaagttaccttctttgtattcccaagtttctctctc 24334139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 5396500 - 5396424
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||| | |||||||||| | |||||||||||||||||| |||| || |||||||    
T  5396500 tcactacaaagacactcaaccctaaagtaacctcctttgtaat-ccaagtttctctctcttccagctctccttcaaaa 5396424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 8689325 - 8689249
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||| ||| ||| ||||| |||||||||| | ||||||||||||| ||||||||| || |||||||    
T  8689325 tcactacaaagacactaaaccctaaagttacctcctttgtaat-ccaagtttctctcacttcaagctctccttcaaaa 8689249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 12745677 - 12745734
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| |||||||||| ||||| ||||||| | |||||||||||||||||||||||    
T  12745677 caaagaccctcaactctaaagttacctccttttttttcccaagtttctctctcttcaa 12745734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 9927698 - 9927757
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagc 91  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||    
T  9927698 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagc 9927757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 30000046 - 30000117
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| || ||| ||| |||| |||||||||  |||||||||||||||||||||||||| || |||||||    
T  30000046 caaagaccctaaaccctaaagttgtctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 30000117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 52095611 - 52095674
Alignment:
Q  40 ctcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  52095611 ctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctgtccttcaaaa 52095674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 5112505 - 5112571
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||| ||||||||||||||  ||| | ||| |||||||||| || ||||||||||||||||||||||    
T  5112505 tcacaacaaagacactcaaacctaaaattacctcctttgtaatctcaagtttctctctcttcaagct 5112571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 6542421 - 6542475
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||| ||| ||||| |||||||||||||| | |||||||||||    
T  6542421 tacaaagacactcaaccctaaagttacctcctttgtattcctaggtttctctctc 6542475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 36315056 - 36314983
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||| ||| ||| ||||| |||||||||| ||| |||||| |||||||||||||| || |||||||    
T  36315056 ctacaaagacactaaaccctaaagttacctcctttgtaatcc-aagtttatctctcttcaagctctccttcaaaa 36314983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 36329265 - 36329192
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||| ||| ||| ||||| |||||||||| ||| |||||| |||||||||||||| || |||||||    
T  36329265 ctacaaagacactaaaccctaaagttacctcctttgtaatcc-aagtttatctctcttcaagctctccttcaaaa 36329192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 38152267 - 38152201
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| ||| |||||| ||| || ||||||||||||| ||||    
T  38152267 tcactacaaagacactcaaccctaaagttacctcatttgtaatccaaattttctctctcttccagct 38152201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 51336996 - 51336938
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||| ||||| ||| |||||  ||||||||||||| |||||||||||||    
T  51336996 tcactacaaagacattcaaccctaaagttacttcctttgtattcctaagtttctctctc 51336938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 5143528 - 5143604
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| ||||| |||| | ||||||||||||  ||||||||| || |||||||    
T  5143528 tcactacaaagacactcaaccctaaagttacctcctctgtaat-ccaagtttctcttacttcaagctctccttcaaaa 5143604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 5429606 - 5429537
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaa 101  Q
    ||||||| |||||| ||| |||||  |||||||  |||||||||||||||||||||||||| || |||||    
T  5429606 caaagaccctcaaccctaaagttacttcctttgatttcccaagtttctctctcttcaagctctccttcaa 5429537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 16628701 - 16628625
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||| | | |||| ||||||||||||| |||| || |||||||    
T  16628701 tcactacaaagacactcaaccctaaagttacctcctttgcaat-ccaattttctctctcttctagctctccttcaaaa 16628625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 25861862 - 25861786
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| || ||||||| | ||||||||||||||||  ||||| || |||||||    
T  25861862 tcactacaaagacactcaaccctaaagttaccttctttgtaat-ccaagtttctctctctaaaagctctccttcaaaa 25861786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 48142969 - 48142896
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttct-ttcaaaaa 104  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||| |||| ||| ||||||||    
T  48142969 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttctagctctctcttcaaaaa 48142896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 1982962 - 1982820
Alignment:
Q  161 aaatcatgtcatgattcgtaacatacgatctaaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaa 260  Q
    ||||| ||||| |||||||||| ||||| | |||||||| ||| ||||| || ||||||| |||||||||    ||||| |||||||||||| | ||| |    
T  1982962 aaatcgtgtcacgattcgtaacgtacgacccaaggtaca-aaaccttatccaaaaattgtgtcacgatggatcaaaatcttgtcacgattttacaccaga 1982864  T
Q  261 aaactccatgttcattgcctatgaaatcgtgtcacgccatccaaa 305  Q
     ||  ||||||||  |||| | ||||||||||||||||| |||||    
T  1982863 gaaa-ccatgttctatgccaacgaaatcgtgtcacgccacccaaa 1982820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 1983129 - 1983070
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| || |||||||  ||||||| |||||||||    
T  1983129 tcactacaaagacactcaaccctaaagttaccttctttgtaaacccaagtctctctctct 1983070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 6743241 - 6743179
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||||||||||||  ||  ||||| |||||||||| ||| |||||||||||||||||||||    
T  6743241 ctacaaagacactcaaacctcaagttacctcctttgtaatcc-aagtttctctctcttcaagct 6743179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 37740553 - 37740482
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| | ||| ||||||||  |||||||||||||||||||||| ||| || |||||||    
T  37740553 caaagaccctcaaccctaaacttacctcctttgatttcccaagtttctctctcttcatgctctccttcaaaa 37740482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 31985458 - 31985397
Alignment:
Q  30 tacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||| ||||||||| ||| ||||  |||||||||| ||| |||||||||||||||||||||    
T  31985458 tacaaaaacactcaaccctaaagttccctcctttgtaatcc-aagtttctctctcttcaagct 31985397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 12739791 - 12739848
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| |||||| ||| ||||| ||||||||  ||| |||||||||||||||||||    
T  12739791 caaagaccctcaaccctaaagttacctcctttgatttctcaagtttctctctcttcaa 12739848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 12747997 - 12748054
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaa 89  Q
    ||||||| |||||| ||| ||||| ||||||||  ||| |||||||||||||||||||    
T  12747997 caaagaccctcaaccctaaagttacctcctttgatttctcaagtttctctctcttcaa 12748054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 29254421 - 29254368
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||  ||||| ||| ||||||||||||||  |||||||||||||||||||    
T  29254421 caaagaccttcaaccctaaagttatctcctttgatttcccaagtttctctctct 29254368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 42599403 - 42599328
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| ||  ||||| || |||||||    
T  42599403 tcactacaaagacactcaac-ctaaagttacctcctttgtaat-ccaagtttctctcactaaaagctctccttcaaaa 42599328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 46147596 - 46147656
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||| |||||||| |||||    
T  46147596 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctcttgaagct 46147656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 28750896 - 28750967
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| ||||||||||    
T  28750896 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctctttcaaaa 28750967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 10282022 - 10282080
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||    
T  10282022 tcactacaaagacactcaaccctaaagttacctcctttgtattctcaagtttctctctc 10282080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 14520498 - 14520574
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | | ||||||||||||||||||||| || |||||||    
T  14520498 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ctaagtttctctctcttcaagctctccttcaaaa 14520574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 28832525 - 28832583
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||    
T  28832525 tcactacaaagacactcaactctaaagttacctcctttgtaat-ccaagtttctctctct 28832583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 42428671 - 42428742
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  ||||| ||| ||||||||||||||  |||||||||||||||||||||||||| || |||||||    
T  42428671 caaagaccttcaaccctaaagttatctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 42428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 39468791 - 39468861
Alignment:
Q  33 aaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||    
T  39468791 aaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 39468861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 11916801 - 11916725
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||| ||||||| ||| ||||| |||||||||| | ||||||||||||| ||||||||| || |||||||    
T  11916801 tcactacaaagaaactcaaccctaaagttacctcctttgtaat-ccaagtttctctcacttcaagctctccttcaaaa 11916725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 17003788 - 17003712
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||||||  ||||| || |||||||    
T  17003788 tcactacaaagacattcaaccctaaagttatctcctttgtaat-ccaagtttctctctctcaaagctctccttcaaaa 17003712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 13488130 - 13488059
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||| |||| || |||||||    
T  13488130 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttctagctctccttcaaaa 13488059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 42426476 - 42426547
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||| |||||||| || |||||||    
T  42426476 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctcttttcaagctctccttcaaaa 42426547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 3880570 - 3880628
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    ||||||||| |||||||||||||  ||||| |||||||||||||| | |||||||||||    
T  3880570 tcactacaaggacactcaactctcaagttacctcctttgtattcctaggtttctctctc 3880628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 7160733 - 7160667
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||| ||| |||||| |||||| ||||||  ||||||||||    
T  7160733 tcactacaaagacactcaaccctaaagttacctcatttgtaatcccaaatttctcattcttcaagct 7160667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 9353161 - 9353100
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttca 88  Q
    |||||||||||||||| ||| ||| ||||| |||||||||| | |||||||||||||||||||    
T  9353161 tcactacaaagacacttaaccctaaagttacctcctttgtaat-ccaagtttctctctcttca 9353100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 11181661 - 11181596
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||||||||||||||||  || ||||| ||||||||||   |||||||||||||||||||||||    
T  11181661 tcactacaaagacactcaaccataaagttacctcctttgta-aaccaagtttctctctcttcaagct 11181596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 15464802 - 15464867
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||  || ||||||| ||| |||||||||||||||||||||    
T  15464802 tcactacaaagacactcaaccctaaagtttccttctttgtaatcc-aagtttctctctcttcaagct 15464867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 12084006 - 12083930
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||| ||||||||||||| ||| ||||| |||||||||| | ||||||||||||| |||| |||| || |||||||    
T  12084006 tcactataaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctcacttctagctctccttcaaaa 12083930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 30683161 - 30683232
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| | ||| ||||| ||  |||||||||||||||||||||||||| || |||||||    
T  30683161 caaagaccctcaaccctaaaattacctcctctgatttcccaagtttctctctcttcaagctctccttcaaaa 30683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 38219670 - 38219728
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  38219670 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 38219728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 25412664 - 25412618
Alignment:
Q  57 ctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||  |||||||||||||||||||||||||| || |||||||    
T  25412664 ctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 25412618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 13342962 - 13342917
Alignment:
Q  58 tcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  |||||||||||||||||||||||||| || |||||||    
T  13342962 tcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 13342917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 30182490 - 30182445
Alignment:
Q  58 tcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  |||||||||||||||||||||||||| || |||||||    
T  30182490 tcctttgatttcccaagtttctctctcttcaagctctcattcaaaa 30182445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 36074311 - 36074356
Alignment:
Q  58 tcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  |||||||||||||||||||||||||| || |||||||    
T  36074311 tcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 36074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 13695945 - 13696021
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaatgaa 108  Q
    |||||||||||||| ||| || ||||| |||||  ||| |||||||||||||||| ||||  ||||  |||||||||    
T  13695945 caaagacactcaaccctaaagctatcttctttgatttctcaagtttctctctcttaaagcactcttcaaaaaatgaa 13696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 37439072 - 37439004
Alignment:
Q  35 agacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||| |||||| ||| ||||| ||| ||||  || ||||||||||||||||||||||| || |||||||    
T  37439072 agaccctcaaccctaaagttacctcatttgattttccaagtttctctctcttcaagctctccttcaaaa 37439004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 19073198 - 19073256
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  19073198 tcactacaaagacactcaaccctcaagttacctcctttgtattcccaagtttctctctc 19073256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 19121088 - 19121146
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  19121088 tcactacaaagacactcaaccctcaagttacctcctttgtattcccaagtttctctctc 19121146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 40816643 - 40816585
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  40816643 tcactacaaagacactcaaccctcaagttacctcctttgtattcccaagtttctctctc 40816585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 47703762 - 47703704
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||    
T  47703762 tcactacaaagacactcaaccctaaagttacctcctttgtattctcaagtttctctctc 47703704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 21536399 - 21536323
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| ||||||||| || |||||||    
T  21536399 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctcacttcaagctctccttcaaaa 21536323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 29652081 - 29652157
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||| |||||||| || |||||||    
T  29652081 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctcttttcaagctctccttcaaaa 29652157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 31659165 - 31659094
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||||||| ||| ||||||    
T  31659165 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctctctcaaaa 31659094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 26644727 - 26644666
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttca 88  Q
    |||||||||||||||||||| ||| | |||||||||||||| | |||||||||||||||||||    
T  26644727 tcactacaaagacactcaaccctaaaattatctcctttgtaat-ccaagtttctctctcttca 26644666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 13598668 - 13598744
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||||||  || ||||| |||||||||| | |||| |||||||||||||||||| || |||||||    
T  13598668 tcactacaaagacactcaaccataaagttacctcctttgtaat-ccaattttctctctcttcaagctctccttcaaaa 13598744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 47102668 - 47102592
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||  ||||| || |||||||    
T  47102668 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctctaaaagctctcattcaaaa 47102592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 28220467 - 28220527
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||    
T  28220467 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagct 28220527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 28223662 - 28223722
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||    
T  28223662 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagct 28223722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 1833449 - 1833378
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| ||||||  || ||||||||||||||  ||||||||||||||||||||||| || || |||||||    
T  1833449 caaagaccctcaaccttaaagttatctcctttgatttcccaagtttctctctcttcaatctctcattcaaaa 1833378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 3156793 - 3156722
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||||||||| |||| || |||||||    
T  3156793 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttccagctctccttcaaaa 3156722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 3189258 - 3189187
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||| ||| || |||||||    
T  3189258 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcatgctctccttcaaaa 3189187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 3198075 - 3198004
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||| ||| || |||||||    
T  3198075 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcatgctctccttcaaaa 3198004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 3206914 - 3206843
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||||||||||||||||||||| ||| || |||||||    
T  3206914 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttctctctcttcatgctctccttcaaaa 3206843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 10925150 - 10925079
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  || ||||||||||||||||||||||| || |||||||    
T  10925150 caaagaccctcaaccctaaagttacctcctttgattttccaagtttctctctcttcaagctctccttcaaaa 10925079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 27104231 - 27104153
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaaat 105  Q
    ||||||||||||||||||||  || ||||| |||||||||| | ||||||||||||||||  ||||| ||| ||||||||    
T  27104231 tcactacaaagacactcaaccttaaagttacctcctttgtaat-ccaagtttctctctctaaaagctctctctcaaaaat 27104153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 37070035 - 37070100
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||||||||||||||||  || ||||| |||||||||| | |||||||||||||||||| ||||    
T  37070035 tcactacaaagacactcaaccataaagttacctcctttgtaat-ccaagtttctctctcttccagct 37070100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 47098651 - 47098578
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||||||  ||||| || |||||||    
T  47098651 ctacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctctctaaaagctctcattcaaaa 47098578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 3281975 - 3282051
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||||||  || ||||| ||| |||||| ||| ||||||||||| ||||||||| || |||||||    
T  3281975 tcactacaaagacactcaaccataaagttacctcatttgtaatcc-aagtttctctcacttcaagctctccttcaaaa 3282051  T

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Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 9022735 - 9022659
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||| ||||| | | || || ||||||||||  |||||||||||||||||||||||| || |||||||    
T  9022735 tcactacaaagacattcaac-caaaagatacctcctttgtaaacccaagtttctctctcttcaagctctccttcaaaa 9022659  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 20762573 - 20762528
Alignment:
Q  58 tcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||    
T  20762573 tcctttgatttcccaagtttctctctcttcaagctctctttcaaaa 20762528  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 9022588 - 9022516
Alignment:
Q  192 aaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaaaaac 264  Q
    |||||||  ||||||||| || ||||||| ||||||||||   |||||||||||||||||| | |||||||||    
T  9022588 aaggtacgaaaatcttatccaaaaattgtgtcacgatggctcaaaatcgtgtcacgattttacaccaaaaaac 9022516  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 49918276 - 49918216
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||  ||||| ||| ||||| ||||||||  ||||||||||||||||||||||||||    
T  49918276 caaagaccttcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagct 49918216  T

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Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 19358669 - 19358611
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  19358669 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 19358611  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 19366133 - 19366075
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  19366133 tcactacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 19366075  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 32889706 - 32889764
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    |||||||||||||||||||| ||| ||||| |||||||| | | ||||||||||||||||    
T  32889706 tcactacaaagacactcaaccctaaagttacctcctttgcaat-ccaagtttctctctct 32889764  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 37503795 - 37503866
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||| | ||||||||  ||||||||||||||||||||||| || || |||||||    
T  37503795 caaagaccctcaaccctaaagtcacctcctttgatttcccaagtttctctctcttcaacctctccttcaaaa 37503866  T

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Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 13604451 - 13604386
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||| ||||||| ||| ||||  |||||||||| | ||||||||||||||||| |||||    
T  13604451 tcactacaaagatactcaaccctaaagttccctcctttgtaat-ccaagtttctctctctttaagct 13604386  T

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Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 22819699 - 22819756
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctct 83  Q
    |||||||||||||||| ||  ||| ||||| ||||||||||  |||||||||||||||    
T  22819699 tcactacaaagacactaaatcctaaagttacctcctttgtaaacccaagtttctctct 22819756  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 13138215 - 13138275
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||| |||||||| |||||    
T  13138215 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctcttgaagct 13138275  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 24202591 - 24202536
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  24202591 ctacaaagacactcaaccctaaagttccctcctttgtaat-ccaagtttctctctct 24202536  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 28265807 - 28265867
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||| |||||||||||||| |||||    
T  28265807 caaagaccctcaaccctaaagttacctcctttgatttccctagtttctctctcttgaagct 28265867  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 30476724 - 30476760
Alignment:
Q  67 ttcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||||||||| || |||||||    
T  30476724 ttcccaagtttctctctcttcaagctctccttcaaaa 30476760  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 45644596 - 45644656
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||||||||||||  ||||| ||||| |||||||| |||||    
T  45644596 caaagaccctcaaccctaaagttatctcctttgatttccctagtttttctctcttgaagct 45644656  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 50167429 - 50167489
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||| |||||||||||||| |||||    
T  50167429 caaagaccctcaaccctaaagttacctcctttgatttccctagtttctctctcttgaagct 50167489  T

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Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 85951 - 86027
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    |||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| ||||||||| || |||||||    
T  85951 tcactacaaagacactcaaccctaaagttacctcctttgtaat-ccaagtttctctcacttcaagctatccttcaaaa 86027  T

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Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 11001 - 11059
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctc 84  Q
    ||||||||||||||||||||  || ||||| |||||||||||||| |||||||||||||    
T  11001 tcactacaaagacactcaaccataaagttacctcctttgtattccaaagtttctctctc 11059  T

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Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 5953 - 6029
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||||||||||||||||  || ||||| |||||||||| | |||| |||||||||||||||||| || |||||||    
T  5953 tcactacaaagacactcaaccataaagttacctcctttgtaat-ccaattttctctctcttcaagctctccttcaaaa 6029  T

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Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 133108 - 133043
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||| ||||||| ||| ||||  |||||||||| | ||||||||||||||||| |||||    
T  133108 tcactacaaagaaactcaaccctaaagttccctcctttgtaat-ccaagtttctctctctttaagct 133043  T

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Target: scaffold0140 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 8246 - 8181
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    |||||||||||||||||||| ||| ||||  |||||||||| | |||||||||||||||||| ||||    
T  8246 tcactacaaagacactcaaccctaaagttccctcctttgtaat-ccaagtttctctctcttccagct 8181  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 5785 - 5728
Alignment:
Q  26 tcactacaaagacactcaactctatagttatctcctttgtattcccaagtttctctct 83  Q
    |||||||||||||||||||| ||  ||||| |||||||||||||| | ||||||||||    
T  5785 tcactacaaagacactcaaccctcaagttacctcctttgtattcctaggtttctctct 5728  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 114517 - 114457
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| |||||| ||| ||||| ||||||||  ||| ||||||||||||||||||||||    
T  114517 caaagaccctcaaccctaaagttacctcctttgatttctcaagtttctctctcttcaagct 114457  T

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Target: scaffold0098 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 45474 - 45532
Alignment:
Q  33 aaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagct 92  Q
    ||||||| ||||| ||| ||||| |||||||||| ||| |||||||||||||||||||||    
T  45474 aaagacattcaaccctaaagttacctcctttgtaatcc-aagtttctctctcttcaagct 45532  T

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Target: scaffold0066 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 20656 - 20727
Alignment:
Q  32 caaagacactcaactctatagttatctcctttgtattcccaagtttctctctcttcaagctttctttcaaaa 103  Q
    ||||||| |||||| ||| ||||| ||||||||  |||| |||||||||||||||| |||| || |||||||    
T  20656 caaagaccctcaaccctaaagttacctcctttgatttccaaagtttctctctcttctagctctccttcaaaa 20727  T

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Target: scaffold0188 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 17774 - 17719
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  17774 ctacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 17719  T

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Target: scaffold0188; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 23867 - 23812
Alignment:
Q  29 ctacaaagacactcaactctatagttatctcctttgtattcccaagtttctctctct 85  Q
    ||||||||||||||||| ||| ||||  |||||||||| | ||||||||||||||||    
T  23867 ctacaaagacactcaaccctagagttccctcctttgtaat-ccaagtttctctctct 23812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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