View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10075_low_6 (Length: 322)
Name: NF10075_low_6
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10075_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 40382409 - 40382729
Alignment:
| Q |
7 |
aatatgtcacaagaaaatgagtcgtgaaaatcacaaaagcctgcatatgcaatatgcatagtactatagtagagaattccaggggccttattagcnnnnn |
106 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
40382409 |
aatatgtcacaagaaaatgagtcgtgaaaatcagaaaagcctgcatatgcaatatgcatagtactatagtagagaattccttgg-ccttattagcaaaaa |
40382507 |
T |
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| Q |
107 |
nngaagagaattctttgacctttcaagtcaaccatcccttaggtgcaa--------ttgcaagtaagttccatttgaatttcacgtgcaattaatttgtg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382508 |
aagaagagaattctttgacctttcaagtcaaccatcccttaggtgcaaatgtgcaattgcaagtaagttccatttgaatttcacgtgcaattaatttgtg |
40382607 |
T |
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| Q |
199 |
gatgccactattttgtactattac--tagtactagtactatatactttgcctagtcacataattatataagtgatgatagtgacgtgatgctagtcaaga |
296 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40382608 |
gatgccactattttgtactattacactagtactagtaccatatactttgcctagtcacatacttatataagtgatgatagtgacgtgatgctagtcaaga |
40382707 |
T |
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| Q |
297 |
aattaatcctggaccaccaaac |
318 |
Q |
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|||||||||||||||||||||| |
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| T |
40382708 |
aattaatcctggaccaccaaac |
40382729 |
T |
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