View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10075_low_7 (Length: 315)

Name: NF10075_low_7
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10075_low_7
NF10075_low_7
[»] scaffold0107 (1 HSPs)
scaffold0107 (7-302)||(33893-34188)
[»] chr7 (4 HSPs)
chr7 (7-301)||(12731749-12732042)
chr7 (242-300)||(37947183-37947241)
chr7 (240-301)||(3701961-3702022)
chr7 (272-301)||(26172054-26172083)
[»] chr1 (5 HSPs)
chr1 (240-301)||(14784129-14784190)
chr1 (240-293)||(49087672-49087725)
chr1 (240-302)||(5447844-5447906)
chr1 (242-301)||(638243-638302)
chr1 (248-300)||(19487939-19487991)
[»] chr8 (4 HSPs)
chr8 (240-299)||(22795271-22795330)
chr8 (240-300)||(25434306-25434366)
chr8 (240-299)||(29454915-29454971)
chr8 (244-300)||(25434872-25434928)
[»] chr3 (3 HSPs)
chr3 (242-295)||(4609336-4609389)
chr3 (240-301)||(16224636-16224697)
chr3 (240-303)||(49492236-49492299)
[»] chr4 (1 HSPs)
chr4 (240-303)||(17258549-17258612)
[»] scaffold0186 (1 HSPs)
scaffold0186 (240-301)||(16887-16948)
[»] chr2 (2 HSPs)
chr2 (240-301)||(26796460-26796521)
chr2 (240-294)||(19181361-19181415)
[»] scaffold0070 (1 HSPs)
scaffold0070 (240-300)||(24823-24883)
[»] chr5 (1 HSPs)
chr5 (241-300)||(28668834-28668893)


Alignment Details
Target: scaffold0107 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 33893 - 34188
Alignment:
Q  7 cctttagcacccttagtaaacaggtcacataaaaaacatattgaatcaaaataattcattttgttttacaaataatccattattttataatttttcatga 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33893 cctttagcacccttagtaaacaggtcacataaaaaacctattgaatcaaaataattcattttgttttacaaatattccattattttataatttttcatga 33992  T
Q  107 gagaaaagaaataacaaagaggaataatagcatcgggttttatgaaccctagactatagcaaagctatcactaatgtatatgatatgtttaatattcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33993 gagaaaagaaataacaaagaggaataatagcatcgggttttatgaaccctagactatagcaaagctatcactaatgtatatgatatgtttaatattcatc 34092  T
Q  207 aataattcctcaagatatcatttatgnnnnnnnactgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccct 302  Q
    ||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34093 aataattcctcaagatatcatttatgtttttttactgaatcaagattgaggaaaacatcaatgaaccgttggacatcccgactaggtcggcaccct 34188  T

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Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 12731749 - 12732042
Alignment:
Q  7 cctttagcacccttagtaaacaggtcacataaaaaacatattgaatcaaaataattcattttgttttacaaataatccattattttataatttttcatga 106  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12731749 cctttagcaaccttagtaaacaggtcacataaaaaacctattgaatcaaaataattcattttgttttacaaataatccattattttaaaatttttcatga 12731848  T
Q  107 gagaaaagaaataacaaagaggaataatagcatcgggttttatgaaccctagactatagcaaagctatcactaatgtatatgatatgtttaatattcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12731849 gagaaaagaaataacaaagaggaataatagcatcgggttttatgaaccctagactatagcaaagctatcactaatgtatatgatatgtttaatattcatc 12731948  T
Q  207 aataattcctcaagatatcatttatgnnnnnnnactgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12731949 aataattcctcaagatatcatttatg-ttttttactgaatcaagagtgaggaaaacatcaatgaactgctggacatcccgactaggtcggcaccc 12732042  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 37947183 - 37947241
Alignment:
Q  242 tgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacc 300  Q
    |||||||||||||||||| ||||||| || ||| || |||| |||||||||||||||||    
T  37947183 tgaatcaagagtgaggaagacatcaaggagccgttgaacattccgactaggtcggcacc 37947241  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 3701961 - 3702022
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    |||||||||||||||||||| |||||||  | ||| |||| |||| |||||||||| |||||    
T  3701961 actgaatcaagagtgaggaagacatcaaaaagccgatggatatcctgactaggtcgacaccc 3702022  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 26172083 - 26172054
Alignment:
Q  272 ccgctggacatcccgactaggtcggcaccc 301  Q
    ||||||||||||||||||||||||||||||    
T  26172083 ccgctggacatcccgactaggtcggcaccc 26172054  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 14784190 - 14784129
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||    
T  14784190 actgaatcaagagtgaggaagacatcaaggagccgctggacatcccgactaggtcggaaccc 14784129  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 49087725 - 49087672
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggt 293  Q
    |||||||||||||||||||| ||||||| || ||||||||||||||||||||||    
T  49087725 actgaatcaagagtgaggaagacatcaaagagccgctggacatcccgactaggt 49087672  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 5447844 - 5447906
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccct 302  Q
    |||||||||| ||| ||||||||||||| || ||| ||||||||||| |||||||||||||||    
T  5447844 actgaatcaatagtcaggaaaacatcaaagagccgttggacatcccggctaggtcggcaccct 5447906  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 638302 - 638243
Alignment:
Q  242 tgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    |||||||||||||||||| ||||||| || |||||||||||||| | |||||||| ||||    
T  638302 tgaatcaagagtgaggaagacatcaaggagccgctggacatcccaattaggtcggtaccc 638243  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 19487939 - 19487991
Alignment:
Q  248 aagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacc 300  Q
    |||||||||||| ||||||| ||  ||||||||||||||| ||||||||||||    
T  19487939 aagagtgaggaagacatcaaggagtcgctggacatcccgattaggtcggcacc 19487991  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 22795330 - 22795271
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcac 299  Q
    |||||||||||||||||||  ||||||| || ||||||||||||||||||||||||||||    
T  22795330 actgaatcaagagtgaggatgacatcaaggagccgctggacatcccgactaggtcggcac 22795271  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 25434306 - 25434366
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacc 300  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||  ||||||||    
T  25434306 actgaatcaagagtgaggaagacatcaaagaaccgttggacatcccgactaaatcggcacc 25434366  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 29454915 - 29454971
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcac 299  Q
    ||||||||||||||||||| |   |||| || |||||||||||||||| |||||||||||    
T  29454915 actgaatcaagagtgaggata---tcaaggagccgctggacatcccgattaggtcggcac 29454971  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 25434872 - 25434928
Alignment:
Q  244 aatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacc 300  Q
    |||||||||| ||||| ||||||| || | | |||||||| ||||||||||||||||    
T  25434872 aatcaagagtcaggaacacatcaaggagctgttggacatctcgactaggtcggcacc 25434928  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 4609336 - 4609389
Alignment:
Q  242 tgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcg 295  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  4609336 tgaatcaagagtgaggaagacatcaaggaaccgctggacatgccgactaggtcg 4609389  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 16224636 - 16224697
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    |||||||||||||| ||||| ||||||| || |||||||||||| |||||||||||||||||    
T  16224636 actgaatcaagagtcaggaagacatcaaggagccgctggacatctcgactaggtcggcaccc 16224697  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 49492236 - 49492299
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacccta 303  Q
    |||||| ||||||||||||  | ||||| || ||| ||||||||||||||||||||||||||||    
T  49492236 actgaaccaagagtgaggatgaaatcaaggagccgatggacatcccgactaggtcggcacccta 49492299  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 17258612 - 17258549
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacccta 303  Q
    |||||||||||||||||||| ||||||| ||  || |||||||||||| |||||||||||||||    
T  17258612 actgaatcaagagtgaggaagacatcaaggagtcgttggacatcccgaataggtcggcacccta 17258549  T

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Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 16948 - 16887
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    ||||||| |||||||||||| ||||||| || |||||||||||||| ||||||| |||||||    
T  16948 actgaattaagagtgaggaagacatcaaggagccgctggacatcccaactaggttggcaccc 16887  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 26796460 - 26796521
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcaccc 301  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||| ||||    
T  26796460 actgaatcaagagtgaggaagacatcaaggagccgttggacatcccaactaggtcggtaccc 26796521  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 19181361 - 19181415
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtc 294  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||| |||||    
T  19181361 actgaatcaagagtgatgaagacatcaaggagccgctggacatcccgacaaggtc 19181415  T

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Target: scaffold0070 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 24883 - 24823
Alignment:
Q  240 actgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacc 300  Q
    ||||||||||||||| | || ||||||| || ||| || ||||||||||||||||||||||    
T  24883 actgaatcaagagtgggaaacacatcaaggagccgttgaacatcccgactaggtcggcacc 24823  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 28668893 - 28668834
Alignment:
Q  241 ctgaatcaagagtgaggaaaacatcaatgaaccgctggacatcccgactaggtcggcacc 300  Q
    ||||||||||| ||||||| ||||||| || ||  |||||| ||||||||||||||||||    
T  28668893 ctgaatcaagaatgaggaagacatcaaagagccattggacaacccgactaggtcggcacc 28668834  T

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