View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10075_low_8 (Length: 311)

Name: NF10075_low_8
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10075_low_8
NF10075_low_8
[»] chr2 (9 HSPs)
chr2 (19-301)||(5576461-5576741)
chr2 (18-196)||(5573403-5573580)
chr2 (18-175)||(5586954-5587111)
chr2 (19-198)||(5593165-5593346)
chr2 (19-169)||(12051780-12051934)
chr2 (86-175)||(12064683-12064772)
chr2 (86-196)||(12059272-12059381)
chr2 (138-198)||(5582733-5582793)
chr2 (232-284)||(5582647-5582699)
[»] chr8 (1 HSPs)
chr8 (25-169)||(36357884-36358028)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 5576741 - 5576461
Alignment:
Q  19 tttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5576741 tttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgg 5576642  T
Q  119 gcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatgattatgaaatctgattctctc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576641 gcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatgattatgaaatctgattctctc 5576542  T
Q  219 nnnnnnnnngtaagagtaaactatactgattgaatctataagtgtttttcattattcttttctcttgttacattaatcctttg 301  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5576541 --tttttttgtaagagtaaactatactgattgaatctataagtgtttttcattattcttttctcttgttacattaatcttttg 5576461  T

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Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 5573580 - 5573403
Alignment:
Q  18 atttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatg 117  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  5573580 atttatctttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatg 5573481  T
Q  118 ggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattat 196  Q
    || |||||||||||||||||||||||| ||||| |||||||||||||||||| |||| | ||||||||  |||||||||    
T  5573480 ggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacatt-ctttcaacttggctatattat 5573403  T

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Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 5587111 - 5586954
Alignment:
Q  18 atttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatg 117  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||    
T  5587111 atttatctttggagactctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatg 5587012  T
Q  118 ggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattc 175  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  5587011 ggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattc 5586954  T

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Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 5593346 - 5593165
Alignment:
Q  19 tttatctttggagattctttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaatcgacttcccga 115  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||  |   |||| ||| ||| |||||||| ||||| || |||||||||||||    
T  5593346 tttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccga 5593247  T
Q  116 tgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga 198  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | || |||||||| |||||||||    
T  5593246 tgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga 5593165  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 12051780 - 12051934
Alignment:
Q  19 tttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcga---cttcc-cg 114  Q
    ||||||||||| || ||||||| |||||||| |||||| || |||||||| |||| |||  ||| | ||||||||||||||||||||||   ||||| ||    
T  12051780 tttatctttggggactctttatatgatagtgaaaacaacaataaccttcctacctttgcttaatttgattacaaaccttatggaatcgattccttcctcg 12051879  T
Q  115 atgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagta 169  Q
     | ||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  12051880 ctcggcgcaaccagaagatttaccaacggtcgaactgcaattaacataataagta 12051934  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 12064683 - 12064772
Alignment:
Q  86 attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattc 175  Q
    ||||||||||||||||||| |||| |||||| ||  ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  12064683 attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattc 12064772  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 12059272 - 12059381
Alignment:
Q  86 attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaactt 185  Q
    |||| ||||||||||||||||||| ||||||  |  || || ||||||||||||| ||||||||| |||||||||||||||||| |||| | ||||| ||    
T  12059272 attagaaaccttatggaatcgactccccgatcagtgcagccagaagatttaccaatggtcgaactgcaattgacataataagtaacatt-ctttcaattt 12059370  T
Q  186 atctatattat 196  Q
    | |||||||||    
T  12059371 aactatattat 12059381  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 5582793 - 5582733
Alignment:
Q  138 caacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga 198  Q
    ||||||||||||| |||||||||||||||||| || | | ||||| |||||||||||||||    
T  5582793 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatga 5582733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 5582699 - 5582647
Alignment:
Q  232 gagtaaactatactgattgaatctataagtgtttttcattattcttttctctt 284  Q
    |||||||||||| |||| ||| |  ||||||||||||||| ||||||||||||    
T  5582699 gagtaaactatattgatcgaaccagtaagtgtttttcattgttcttttctctt 5582647  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 36358028 - 36357884
Alignment:
Q  25 tttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaa 124  Q
    ||||||||||||||||| || ||||||||||| || |||||  | |||  ||| |||  ||||||||  |||||||| || || || ||    || || |    
T  36358028 tttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtccta 36357929  T
Q  125 ccggaagatttaccaacggtcgaacttcaattgacataataagta 169  Q
    |||||||||||||||| || || ||||||||||||||||| ||||    
T  36357928 ccggaagatttaccaatggccgtacttcaattgacataatcagta 36357884  T

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