View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10075_low_9 (Length: 310)

Name: NF10075_low_9
Description: NF10075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10075_low_9
NF10075_low_9
[»] chr3 (8 HSPs)
chr3 (19-300)||(44784086-44784367)
chr3 (24-78)||(44792966-44793020)
chr3 (165-236)||(44797719-44797790)
chr3 (165-247)||(44801102-44801184)
chr3 (24-77)||(44797855-44797908)
chr3 (41-77)||(44801250-44801286)
chr3 (255-300)||(44786932-44786977)
chr3 (26-78)||(44787149-44787201)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 44784367 - 44784086
Alignment:
Q  19 cttacaacctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgtatatatcatatcatactctcttcaattttcttccctttctca 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44784367 cttacaacctggctgtattgtcttctcaatgaagatacctccacgtttactcgttcgtatatatcatatcatactctcttcaattttcttccctttctca 44784268  T
Q  119 tataataacactagttttgttcttcttgatttacctaattttatgtattaactcgcagaattcaggtaagtacttgcaaggtggtgtcattgctagtctg 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44784267 tataataacactagttttgttcttcttgattcacctaattttatgcattaactcgcagaattcaggtaagtacttgcaaggtggtgtcattgctagtctg 44784168  T
Q  219 gtggatatggtaggcggagttgcaattcccaccggtggagtttctgtcgagatcaacgtctcatgcttggatgctgcctatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44784167 gtggatatggtaggcggagttgcaattcccaccggtggagtttctgtcgagatcaacgtctcatgcttggatgctgcctatg 44784086  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 44793020 - 44792966
Alignment:
Q  24 aacctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgtat 78  Q
    ||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||    
T  44793020 aacctggtcgtgtcgtcttctcaatgaacatacctccacgtttactcgttcgtat 44792966  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 44797790 - 44797719
Alignment:
Q  165 attaactcgcagaattcaggtaagtacttgcaaggtggtgtcattgctagtctggtggatatggtaggcgga 236  Q
    ||||| |||||||||||||||||||||||||| |||||||  ||  ||| |||||||||||| | |||||||    
T  44797790 attaattcgcagaattcaggtaagtacttgcacggtggtgctatcactactctggtggatatcgcaggcgga 44797719  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 44801184 - 44801102
Alignment:
Q  165 attaactcgcagaattcaggtaagtacttgcaaggtggtgtcattgctagtctggtggatatggtaggcggagttgcaattcc 247  Q
    |||||| ||||||||||||||||| ||||||| | |||||  |||| || |||||||||| ||||||| | | ||||||||||    
T  44801184 attaacacgcagaattcaggtaagcacttgcacgttggtgctattgttactctggtggatgtggtaggagcaattgcaattcc 44801102  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 44797908 - 44797855
Alignment:
Q  24 aacctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgta 77  Q
    ||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||    
T  44797908 aacctggtcgtgtcgtcttctcaatgaacatacccccacgtttactcgttcgta 44797855  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 44801286 - 44801250
Alignment:
Q  41 ttctcaatgaagatacctccacgtttactcgttcgta 77  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44801286 ttctcaatgaacatacctccacgtttactcgttcgta 44801250  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 44786977 - 44786932
Alignment:
Q  255 ggagtttctgtcgagatcaacgtctcatgcttggatgctgcctatg 300  Q
    |||||||| ||||||||||| || ||||||||||||||||| ||||    
T  44786977 ggagtttcagtcgagatcaatgtatcatgcttggatgctgcatatg 44786932  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 44787201 - 44787149
Alignment:
Q  26 cctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgtat 78  Q
    ||||||||||| || ||||||||||||||||||||   |||||| ||||||||    
T  44787201 cctggccgtatcgttttctcaatgaagatacctcccaatttacttgttcgtat 44787149  T

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