View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10076_high_10 (Length: 232)

Name: NF10076_high_10
Description: NF10076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10076_high_10
NF10076_high_10
[»] chr5 (3 HSPs)
chr5 (26-101)||(32942611-32942686)
chr5 (19-55)||(25693175-25693211)
chr5 (57-101)||(34117569-34117613)
[»] chr8 (3 HSPs)
chr8 (57-103)||(27028822-27028868)
chr8 (136-170)||(40980994-40981028)
chr8 (53-87)||(42215111-42215145)
[»] chr3 (6 HSPs)
chr3 (57-103)||(18405864-18405910)
chr3 (66-102)||(14145904-14145940)
chr3 (57-92)||(2825149-2825184)
chr3 (56-103)||(12862280-12862327)
chr3 (53-94)||(20669172-20669213)
chr3 (59-103)||(2100190-2100234)
[»] chr6 (7 HSPs)
chr6 (57-118)||(24982681-24982742)
chr6 (57-103)||(31812046-31812092)
chr6 (136-165)||(31623449-31623478)
chr6 (57-89)||(2455815-2455847)
chr6 (25-101)||(5730694-5730769)
chr6 (57-101)||(7148659-7148703)
chr6 (60-96)||(33067156-33067192)
[»] chr4 (4 HSPs)
chr4 (57-101)||(17822898-17822942)
chr4 (60-101)||(16494841-16494882)
chr4 (24-64)||(21523611-21523651)
chr4 (53-85)||(53673687-53673719)
[»] chr2 (4 HSPs)
chr2 (64-103)||(12464513-12464552)
chr2 (26-64)||(41851589-41851627)
chr2 (53-94)||(38078439-38078480)
chr2 (98-168)||(41407167-41407238)
[»] chr1 (4 HSPs)
chr1 (57-103)||(3234048-3234094)
chr1 (58-119)||(11137820-11137881)
chr1 (59-103)||(27976586-27976630)
chr1 (57-101)||(44422692-44422736)
[»] chr7 (3 HSPs)
chr7 (136-169)||(46407456-46407489)
chr7 (57-101)||(27481327-27481371)
chr7 (59-103)||(45593518-45593562)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 32942686 - 32942611
Alignment:
Q  26 agaatttatgtaaacaacttatgacactttacataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    |||||||||| | ||| ||||||||| ||| |||||| ||||||||||||||||| |||| | |||||||||||||    
T  32942686 agaatttatgaatacagcttatgacatttttcataagttctccaagatagcttatgaaaacagcttatagcatata 32942611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 25693211 - 25693175
Alignment:
Q  19 gatatgaagaatttatgtaaacaacttatgacacttt 55  Q
    ||||||||||||||||| |||||||||||||||||||    
T  25693211 gatatgaagaatttatgaaaacaacttatgacacttt 25693175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 34117569 - 34117613
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    |||||||||||||||||||||||| |||  |||||||||| ||||    
T  34117569 cataagctctccaagatagcttatgaaagcaacttatagcttata 34117613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 27028868 - 27028822
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||    
T  27028868 cataagctctccaagatagcttatgaaaacagcttatagcatataca 27028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 40981028 - 40980994
Alignment:
Q  136 agctgcaaataagctgtctatccaaacagggcctt 170  Q
    ||||||||||||||||| |||||||||||||||||    
T  40981028 agctgcaaataagctgtttatccaaacagggcctt 40980994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 42215111 - 42215145
Alignment:
Q  53 tttacataagctctccaagatagcttattaaaata 87  Q
    |||||||||||||||||||||||||||| ||||||    
T  42215111 tttacataagctctccaagatagcttatgaaaata 42215145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 18405864 - 18405910
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  18405864 cataagttctccaagatagcttatgaaaacaacttatagcatataca 18405910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 14145940 - 14145904
Alignment:
Q  66 tccaagatagcttattaaaataacttatagcatatac 102  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14145940 tccaagatagcttatgaaaataacttatagcatatac 14145904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 2825184 - 2825149
Alignment:
Q  57 cataagctctccaagatagcttattaaaataactta 92  Q
    |||||||||||||||||||||||| |||||||||||    
T  2825184 cataagctctccaagatagcttatgaaaataactta 2825149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 12862280 - 12862327
Alignment:
Q  56 acataagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    ||||||| ||||||| ||||||||| |||| |||||||||||||||||    
T  12862280 acataagttctccaatatagcttatgaaaacaacttatagcatataca 12862327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 20669213 - 20669172
Alignment:
Q  53 tttacataagctctccaagatagcttattaaaataacttata 94  Q
    |||||||||||||||||||||||||||| |||| | ||||||    
T  20669213 tttacataagctctccaagatagcttatgaaaacagcttata 20669172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 2100190 - 2100234
Alignment:
Q  59 taagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||||||||||||||| ||||| |||| |||||||||| ||||||    
T  2100190 taagctctccaagataacttatgaaaacaacttatagcttataca 2100234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 24982742 - 24982681
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatatacatcagtgcttatcatg 118  Q
    |||||| ||||||| ||| ||||| |||| | |||||||||||||||| |||||||||||||    
T  24982742 cataagttctccaaaataacttatgaaaacagcttatagcatatacataagtgcttatcatg 24982681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 31812046 - 31812092
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||||||||||||||||||||||| |||| |||||||| | ||||||    
T  31812046 cataagctctccaagatagcttatgaaaacaacttatatcttataca 31812092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 31623478 - 31623449
Alignment:
Q  136 agctgcaaataagctgtctatccaaacagg 165  Q
    ||||||||||||||||||||||||||||||    
T  31623478 agctgcaaataagctgtctatccaaacagg 31623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 2455847 - 2455815
Alignment:
Q  57 cataagctctccaagatagcttattaaaataac 89  Q
    |||||||||||||||||||||||| ||||||||    
T  2455847 cataagctctccaagatagcttatgaaaataac 2455815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 5730769 - 5730694
Alignment:
Q  25 aagaatttatgtaaacaacttatgacactttacataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    |||| |||||| ||||||||||||||| | | || |||||||||| |||||||||| ||| || |||||||| ||||    
T  5730769 aagagtttatggaaacaacttatgaca-tgttcacaagctctccatgatagcttataaaactagcttatagcttata 5730694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 7148703 - 7148659
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    ||||||||||||| | ||||||||||||||| |||||||| ||||    
T  7148703 cataagctctccagggtagcttattaaaataccttatagcttata 7148659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 33067192 - 33067156
Alignment:
Q  60 aagctctccaagatagcttattaaaataacttatagc 96  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  33067192 aagctctccaagatagcttatgaaaacaacttatagc 33067156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 17822898 - 17822942
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  17822898 cataagttctccaagatagcttatgaaaacaacttatagcatata 17822942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 16494841 - 16494882
Alignment:
Q  60 aagctctccaagatagcttattaaaataacttatagcatata 101  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  16494841 aagctctccaagatagcttatgaaaacaacttatagcttata 16494882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 21523651 - 21523611
Alignment:
Q  24 gaagaatttatgtaaacaacttatgacactttacataagct 64  Q
    |||||||||||| ||||||||||||||| ||| ||||||||    
T  21523651 gaagaatttatgaaaacaacttatgacatttttcataagct 21523611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 53673687 - 53673719
Alignment:
Q  53 tttacataagctctccaagatagcttattaaaa 85  Q
    |||||||||||||||||||||||||||| ||||    
T  53673687 tttacataagctctccaagatagcttatgaaaa 53673719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 12464513 - 12464552
Alignment:
Q  64 tctccaagatagcttattaaaataacttatagcatataca 103  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  12464513 tctccaagatagcttatgaaaatagcttatagcatataca 12464552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 41851627 - 41851589
Alignment:
Q  26 agaatttatgtaaacaacttatgacactttacataagct 64  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  41851627 agaatttatggaaacaacttatgacacttttcataagct 41851589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 38078439 - 38078480
Alignment:
Q  53 tttacataagctctccaagatagcttattaaaataacttata 94  Q
    |||||||||||||||||||||||||||| |||| ||| ||||    
T  38078439 tttacataagctctccaagatagcttatgaaaacaacctata 38078480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 41407238 - 41407167
Alignment:
Q  98 tatacatcagtgcttatcatgactaag-gcttgttttata-gctgcaaataagctgtctatccaaacagggcc 168  Q
    ||||||| |||||||||||||| |||| ||||||  |||| |||||||| ||||||| |||||||||||||||    
T  41407238 tatacataagtgcttatcatga-taagcgcttgtgctataagctgcaaacaagctgtttatccaaacagggcc 41407167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 3234048 - 3234094
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||||| ||||||| ||||||||| |||| |||||||||||||||||    
T  3234048 cataagttctccaatatagcttataaaaacaacttatagcatataca 3234094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 11137881 - 11137820
Alignment:
Q  58 ataagctctccaagatagcttattaaaataacttatagcatatacatcagtgcttatcatga 119  Q
    |||||||| ||| |||||||||| |||| |||||| ||| ||||||| | ||||||||||||    
T  11137881 ataagctcaccatgatagcttatcaaaacaacttaaagcttatacataattgcttatcatga 11137820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 27976630 - 27976586
Alignment:
Q  59 taagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||| |||| |||||||||||| |||| |||||||||||||||||    
T  27976630 taagttctcgaagatagcttatgaaaacaacttatagcatataca 27976586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 44422736 - 44422692
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    ||||||||||||| |||||||||| |||||| |||||||| ||||    
T  44422736 cataagctctccaggatagcttataaaaatagcttatagcttata 44422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 46407456 - 46407489
Alignment:
Q  136 agctgcaaataagctgtctatccaaacagggcct 169  Q
    ||||||||||||||||||||||| ||||||||||    
T  46407456 agctgcaaataagctgtctatcctaacagggcct 46407489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 27481327 - 27481371
Alignment:
Q  57 cataagctctccaagatagcttattaaaataacttatagcatata 101  Q
    |||||||| |||| |||||||||| ||||||||||||||| ||||    
T  27481327 cataagctatccatgatagcttatgaaaataacttatagcttata 27481371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 45593562 - 45593518
Alignment:
Q  59 taagctctccaagatagcttattaaaataacttatagcatataca 103  Q
    |||| ||||||||||||||||  |||||| |||||||||||||||    
T  45593562 taagttctccaagatagcttagaaaaatagcttatagcatataca 45593518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University