View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10076_high_4 (Length: 256)
Name: NF10076_high_4
Description: NF10076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10076_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 17754010 - 17753782
Alignment:
| Q |
20 |
ccacatactcctcattttcctcaatctctatgaaatcaggagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17754010 |
ccacatactcctcattttcctcaatctctatgaaatcaggagcaaaagcactccagctctcaatgtactctttggcccagatataaactatgccactcaa |
17753911 |
T |
|
| Q |
120 |
agaaacagacaaaacaataggatgtacaggatgccacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17753910 |
agaaacagacaaaacaataggatgtacaggatgccatgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcc |
17753811 |
T |
|
| Q |
220 |
catatgtaaatcttgtgctctcctttgct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17753810 |
catatgtaaatcttgtgctctcctttgct |
17753782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 17762997 - 17762769
Alignment:
| Q |
20 |
ccacatactcctcattttcctcaatctctatgaaatcaggagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17762997 |
ccacatactcctcattttcctcaatctctatgaaatcaggagcaaaagcactccagctctcaatgtactctttggcccagatataaactatgccactcaa |
17762898 |
T |
|
| Q |
120 |
agaaacagacaaaacaataggatgtacaggatgccacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17762897 |
agaaacagacaaaacaataggatgtacaggatgccatgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcc |
17762798 |
T |
|
| Q |
220 |
catatgtaaatcttgtgctctcctttgct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17762797 |
catatgtaaatcttgtgctctcctttgct |
17762769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 17739856 - 17739628
Alignment:
| Q |
20 |
ccacatactcctcattttcctcaatctctatgaaatcaggagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
17739856 |
ccacatactcctcattttcctcaatctctttgaaatcaggagcaaaagcactccagttctcaatgtactctttggcccagatataaactatgccacacaa |
17739757 |
T |
|
| Q |
120 |
agaaacagacaaaacaataggatgtacaggatgccacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcc |
219 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
17739756 |
agaaacagacacaacaattggacgtacaggatgccacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagctctatcc |
17739657 |
T |
|
| Q |
220 |
catatgtaaatcttgtgctctcctttgct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17739656 |
catatgtaaatcttgtgctctcctttgct |
17739628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 15735961 - 15735736
Alignment:
| Q |
20 |
ccacatactcctcattttcctcaatctctatgaaatcaggagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaa |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
15735961 |
ccacatactcctcattttcctcgatctctttgaaatcaggagcaaaagcactccagttctcaatgtaatctttggcccagatataaactatgccactcaa |
15735862 |
T |
|
| Q |
120 |
agaaacagacaaaacaataggatgtacaggatgccacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcc |
219 |
Q |
| |
|
||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
15735861 |
agaaacagatacaacaattggacgtacaggatgccacgctaaatcaataagggcttccttaggcccttcaaggatttttacaagatgtccagctctatcc |
15735762 |
T |
|
| Q |
220 |
catatgtaaatcttgtgctctccttt |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15735761 |
catatgtaaatcttgtgctctccttt |
15735736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University