View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10076_high_5 (Length: 252)
Name: NF10076_high_5
Description: NF10076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10076_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 47306366 - 47306595
Alignment:
| Q |
7 |
ttggtggtggtggttatggtaatgatatgttttatggtagtgaagaacttatgagaaattttcaatgtgctttaaggaatgaatcctctgtgccaacttg |
106 |
Q |
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| T |
47306366 |
ttggtggtggtggttatggtaatgatatgttttatggtagtgaagaacttatgagaaattttcaatgtgctttaaggaatgaatcctctgtgccaacttg |
47306465 |
T |
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| Q |
107 |
ggttaatgatggtgttaatgttaataatgttaatgtgaatggaatgagtgcacattggtttgatgaatttcgtgggagggtttattcgttagcgaaggat |
206 |
Q |
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| T |
47306466 |
ggttaatgatggtgttaatgttaataatgttaatgtgaatggaatgagtgcacattggtttgatgaatttcgtgggagggtttattcgttagcgaaggat |
47306565 |
T |
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| Q |
207 |
acacatgggagcaagattttgcaagaagtg |
236 |
Q |
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| T |
47306566 |
acacatgggagcaagattttgcaagaagtg |
47306595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 23694634 - 23694769
Alignment:
| Q |
7 |
ttggtggtggtggttatggtaatgatatgttttatggtagtgaagaacttatgagaaattttcaatgtgctttaaggaatgaatcctctgtgccaacttg |
106 |
Q |
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| T |
23694634 |
ttggtggtggtggttatggtaatgatatgttttatggtagtgaagaacttatgagaaattttcaatgtgctttaaggaatgaatcctctgtgccaacttg |
23694733 |
T |
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| Q |
107 |
ggttaatgatggtgttaatgttaataatgttaatgt |
142 |
Q |
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| T |
23694734 |
ggttaatgatggtgttaatgttaataatgttaatgt |
23694769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 20512909 - 20513044
Alignment:
| Q |
7 |
ttggtggtggtggttatggtaatgatatgttttatggtagtgaagaacttatgagaaattttcaatgtgctttaaggaatgaatcctctgtgccaacttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20512909 |
ttggtggtggtggttatggtaatgatatgttttatggtagtgaagaacttatgagaaattatcaatgtgctttaaggaatgaatcctctgtgccaacttg |
20513008 |
T |
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| Q |
107 |
ggttaatgatggtgttaatgttaataatgttaatgt |
142 |
Q |
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| T |
20513009 |
ggttaatgatagtgttaatgttaataatgttaatgt |
20513044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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