View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10076_low_11 (Length: 232)
Name: NF10076_low_11
Description: NF10076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10076_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 24147548 - 24147707
Alignment:
| Q |
1 |
ctttatgttgttttcttaggatttgaaatgtttaagtttttaaattatatatcattgagaggaattgaatc---ttattatgatcacatgacatatgaca |
97 |
Q |
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| T |
24147548 |
ctttatgttgttttcttaggatttgaaaagtttaagtttttaaat----tatcattgagaggaattgaatcttattattatgatcacatgac-------- |
24147635 |
T |
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| Q |
98 |
tgataacttgaaaagtttgagcaatttttcctggacacactaactttacaataaacaattatatcagtaaattt |
171 |
Q |
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| T |
24147636 |
--ataacttgaaaagtttgagcaatttttcctgtacacaccaactttataataaacaattatatcagtaaattt |
24147707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 24152998 - 24153157
Alignment:
| Q |
1 |
ctttatgttgttttcttaggatttgaaatgtttaagtttttaaattatatatcattgagaggaattgaatc---ttattatgatcacatgacatatgaca |
97 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
24152998 |
ctttatgttgttttcttaggatttgaaaagtttaagtttttaaat----tatcattgagaggaattgaatcttattattatgatcacatgac-------- |
24153085 |
T |
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| Q |
98 |
tgataacttgaaaagtttgagcaatttttcctggacacactaactttacaataaacaattatatcagtaaattt |
171 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24153086 |
--ataacttgaaaagtttgagcaatttttcctgtacacaccaactttataataaacaattatatcagtaaattt |
24153157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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