View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10076_low_8 (Length: 244)
Name: NF10076_low_8
Description: NF10076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10076_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 3377044 - 3376816
Alignment:
| Q |
16 |
caactttggtttgtgtaaatcaatgccatcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagacaaactt |
115 |
Q |
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| T |
3377044 |
caactttggtttgtgtaaatcaataccatcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagagaaactt |
3376945 |
T |
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| Q |
116 |
cttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcctcacaaggtggtgttgtgattgaat |
215 |
Q |
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| T |
3376944 |
cttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcctcacaaggtggtgttgtgattgaat |
3376845 |
T |
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| Q |
216 |
tcttggcaatagattttggtaacttctcc |
244 |
Q |
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| T |
3376844 |
tcttggcaatagattttggtaacttctcc |
3376816 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 45765416 - 45765487
Alignment:
| Q |
16 |
caactttggtttgtgtaaatcaatgccatcatcattctccatgaagctagtctttgaaggatcaacatggcc |
87 |
Q |
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| T |
45765416 |
caactttggtttgtgtaaatcaatgtcgtcatcattctccatgaaattaggctttaacggatcaatatggcc |
45765487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 2372487 - 2372397
Alignment:
| Q |
93 |
cattaacatcaaaagacaaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat |
183 |
Q |
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| T |
2372487 |
cattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat |
2372397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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