View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10077_high_1 (Length: 592)

Name: NF10077_high_1
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10077_high_1
NF10077_high_1
[»] chr1 (6 HSPs)
chr1 (218-544)||(40694939-40695264)
chr1 (19-188)||(40695266-40695429)
chr1 (173-260)||(15322212-15322300)
chr1 (131-207)||(48400948-48401023)
chr1 (162-215)||(563857-563910)
chr1 (311-348)||(22066368-22066405)
[»] chr3 (3 HSPs)
chr3 (173-218)||(46621515-46621560)
chr3 (162-240)||(15462088-15462166)
chr3 (134-210)||(26988677-26988752)
[»] chr7 (2 HSPs)
chr7 (125-192)||(10711673-10711739)
chr7 (313-409)||(42003785-42003881)
[»] chr2 (2 HSPs)
chr2 (303-350)||(24578119-24578166)
chr2 (161-215)||(22417298-22417352)
[»] scaffold0071 (1 HSPs)
scaffold0071 (162-240)||(26-104)
[»] chr5 (2 HSPs)
chr5 (313-355)||(2586485-2586527)
chr5 (175-216)||(22023743-22023784)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 218 - 544
Target Start/End: Complemental strand, 40695264 - 40694939
Alignment:
Q  218 acataaagtgtgcgaaaaactcaataagatgaaaaagaatgtgcgttaannnnnnnatcacaaatgaggtcttaaacaagttttaatatgatgcattttt 317  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  40695264 acataaggtgtgcgaaaaactcaataaaatgaaaaagaatgtgcgttaattttta-atcacaaatgaggtcttaaacaagttttaatatgatgcattttt 40695166  T
Q  318 tgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttatccttggatcggcc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40695165 tgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttacccttggatcggcc 40695066  T
Q  418 tttctttcatggatagtcctcccaatttgtacgattaaataattaaattgtcatgtttccattttgttaggtagattctatgagtgtccactctttctgg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40695065 tttctttcatggatagtcctcccaatttgtacgattaaataattaaattgtcatgtttccattttgtttggtagattctatgagtgtccactctttctgg 40694966  T
Q  518 tgacataacaactaataatcttctctc 544  Q
    |||||||||||||||||||||||||||    
T  40694965 tgacataacaactaataatcttctctc 40694939  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 40695429 - 40695266
Alignment:
Q  19 caaggtcgtcttgattgcaatatgattactagtacataactttttacaacttaatttcatgctttcatgcagggcccaatcattaatttatccaaaatgt 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||  |    
T  40695429 caaggtcgtcttgattgcaatatgattactagtacata-ctttttacaacttaatttcatgctttcatgccgggcccgatcattaatttatgcaaaaaat 40695331  T
Q  119 caagatgtcatgttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtt 188  Q
    ||||     || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40695330 caag-----atattcggattctgaaatttgaaatgttttaagtgtgttttagaggattttataaggtgtt 40695266  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 15322300 - 15322212
Alignment:
Q  173 gattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactcaataaga-tgaaaaagaatgtg 260  Q
    |||||||||| ||||||||| ||||||||||||||||| | |||||||||| |   |||| |||| ||||||||  |||||||||||||    
T  15322300 gattttataaagtgtttatgtcgtttgaattttataatccaaattacataatgcacgcgagaaacgcaataagacggaaaaagaatgtg 15322212  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 48400948 - 48401023
Alignment:
Q  131 ttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatgccgtttgaattttat 207  Q
    |||||||||| |||| | |||||||||||  ||||||| |||| ||||||| ||||||||||||||  |||||||||    
T  48400948 ttcggattctaaaatccgaaatgttttaac-gtgttttggaggtttttatagggtgtttatgccgtccgaattttat 48401023  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 563857 - 563910
Alignment:
Q  162 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaa 215  Q
    ||||||| |||||||||||| |||||||||| | ||| |||| |||||||||||    
T  563857 gtgtttttgaggattttatagggtgtttatgtcatttaaattctataattcgaa 563910  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 22066405 - 22066368
Alignment:
Q  311 cattttttgtttgcatatgaagtctttttgtttataaa 348  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  22066405 cattttttgtttgcatgtgaagtttttttgtttataaa 22066368  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 46621560 - 46621515
Alignment:
Q  173 gattttataaggtgtttatgccgtttgaattttataattcgaatta 218  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  46621560 gattttataaggtgtttatgttgtttgaattttataattcgaatta 46621515  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 15462088 - 15462166
Alignment:
Q  162 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactca 240  Q
    |||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||| | ||||| | | |||| |||||||    
T  15462088 gtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 15462166  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 26988752 - 26988677
Alignment:
Q  134 ggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatgccgtttgaattttataat 210  Q
    ||||||| ||||||||||| |||||| ||| |||| ||| |||||||   ||||||||||||||| |||| ||||||    
T  26988752 ggattctaaaattcaaaattttttaa-tgtatttttgagaattttatggagtgtttatgccgtttaaattctataat 26988677  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 10711673 - 10711739
Alignment:
Q  125 gtcatgttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatg 192  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| || | ||||||| ||||||||||    
T  10711673 gtcatgttcggattctgaaatccgaaatgttttaa-tgtgttttggaaggttttatagggtgtttatg 10711739  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 409
Target Start/End: Complemental strand, 42003881 - 42003785
Alignment:
Q  313 ttttttgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttatccttg 409  Q
    ||||| |||||||||||  |  ||||| |||||||||| | ||||  ||  ||||||||| |||| ||||||||  ||||||||||||||| |||||    
T  42003881 tttttagtttgcatatgtgggatttttatttataaaatataataattatttttttgttgggagaactaaagcaacggctttagtagccttacccttg 42003785  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 24578166 - 24578119
Alignment:
Q  303 atatgatgcattttttgtttgcatatgaagtctttttgtttataaaat 350  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  24578166 atatgaggcatttttagtttgtatatgaagtctttttgtttataaaat 24578119  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 22417298 - 22417352
Alignment:
Q  161 tgtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaa 215  Q
    |||||||| |||| ||||||| ||||||||||||||||| ||| |||||| ||||    
T  22417298 tgtgttttggaggtttttatagggtgtttatgccgtttggattatataatccgaa 22417352  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 104 - 26
Alignment:
Q  162 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactca 240  Q
    |||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||| | ||||| | | |||| |||||||    
T  104 gtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 26  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 2586485 - 2586527
Alignment:
Q  313 ttttttgtttgcatatgaagtctttttgtttataaaatttgat 355  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  2586485 ttttttgtttgcatatgaggcctttttgcttataaaatttgat 2586527  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 22023784 - 22023743
Alignment:
Q  175 ttttataaggtgtttatgccgtttgaattttataattcgaat 216  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||    
T  22023784 ttttatagggtgtttatgccgttggaattctataattcgaat 22023743  T

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