View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10077_high_17 (Length: 225)
Name: NF10077_high_17
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 7628474 - 7628285
Alignment:
| Q |
15 |
caaatctaacttatcataatctactcacatgtatccctcgaggacaactgttagagtaaaggtaaagactcaaaaatcttaatccctcacttctctatcc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7628474 |
caaatctaacttatcataatctactcacatgtatccctcgaggacaactgttagagtaaaggtaaagactcaaaaatcttaatccctcacttctctatct |
7628375 |
T |
|
| Q |
115 |
caaaaatttcacatattcaacgcatttttatttgagagtaagtggcggaggccctttagggcatgggtgagccatgacccaccccccaat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7628374 |
caaaaatttcacatattcaacgcatttttatttgagagtaagtggcggaggccctttagggcatgggtgcgccatgacccaccccccaat |
7628285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University