View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10077_high_3 (Length: 497)
Name: NF10077_high_3
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_high_3 |
 | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 31900801 - 31900406
Alignment:
| Q |
18 |
acaaaactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacataccaatgtaaatgactttggtgtagtaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
31900801 |
acaaaactcaaggtggagttaatctcaagtgcagcttaatgtgagttttatgtattgtgacattgtacataccaatttaaatgactttggggtagtaata |
31900702 |
T |
|
| Q |
118 |
tcgtattaaaattgtagaaannnnnnncaattacta---acgaaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaag |
214 |
Q |
| |
|
||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31900701 |
tcgta--aaaattgtagaaaaatttctcaattactactaacaaaagtaaaataggtggaaggaaatgagaaataatatccaaagttagaagtatactaag |
31900604 |
T |
|
| Q |
215 |
aaaagaaacgcaaatataacggcaaaatgcatacataaaatgcacctcaaagtacaaaggtatattaatgtgttacatgtttggtgaggataagtaaccg |
314 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
31900603 |
aaaagaaacgcaaatataatgagaa----------taaaatgcacctcaaagtccaaaggtatattaatgtgttacatgtttggcgaggataagtaactg |
31900514 |
T |
|
| Q |
315 |
ttaataaaaataaagtataacatttgtatcttgaaaacaatattactatnnnnnnnttatgtaataataattagacaacgtttatttttctacatcaata |
414 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31900513 |
ttaataaaaataaagtatatcatttgtatcttgaaaacaatattactataaaaaaattatgtaacaataattagacaacgtttatttttctacatcaata |
31900414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 4740005 - 4740112
Alignment:
| Q |
22 |
aactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacataccaatgtaaatgactttggtgtagtaatatcgt |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |||| | ||||||||||||||| |||| ||||||||||| |||||||||||||| || |
|
|
| T |
4740005 |
aactcaaggtggagtaaatctcaagtgcaacttaatgtgtttttt-tctattgtgacattgtatatacagatgtaaatgacagtggtgtagtaatatagt |
4740103 |
T |
|
| Q |
122 |
attaaaatt |
130 |
Q |
| |
|
|||| |||| |
|
|
| T |
4740104 |
attagaatt |
4740112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 888626 - 888230
Alignment:
| Q |
18 |
acaaaactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacataccaatgtaaatgactttggtgtagtaata |
117 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
888626 |
acaaaacttaaggtggagctaatctcaagtgcagcttaatgtgtgttttatctatcgtgacattgtacataccaatgtaaatgacattggtgtagtaata |
888527 |
T |
|
| Q |
118 |
tcgtattaaaattgtagaaannnnnnncaattactaacgaaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaa |
217 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
888526 |
ttgtattaaaattgtagaaaaatttcacaattactagcgaaagtaaaataggttgaaggaaatgagaaataatatccaaagttagaagtatactaagaaa |
888427 |
T |
|
| Q |
218 |
agaaacgcaaatataacggcaaaatgcatacataaaatgcacctcaaagtacaaaggtatattaatgtgttacatgtttggtgaggataagtaaccgtta |
317 |
Q |
| |
|
||||| |||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
888426 |
agaaatgcaaatataatgaga----------ataaaatgcacctcaaagttcaaaggtatattaatgtgttacatgtttggcgaggataagtaaccgttg |
888337 |
T |
|
| Q |
318 |
ataaaaataaagtataacatttgtatcttgaaaacaatattactatnnnnnnnttatgtaataataattagacaacgtttatttttctacatcaatataa |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
888336 |
ataaaaataaagtatatcatttgtatcttgaaaacaatattactataaaaaaattatgtaacaataattagacaacatttatttttctacactaatataa |
888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 16066555 - 16066629
Alignment:
| Q |
157 |
aaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaaagaaacgcaaatat |
231 |
Q |
| |
|
|||| |||||| |||||||||| | | ||||||||||||||| || ||||||| |||||||||||| | |||||| |
|
|
| T |
16066555 |
aaagaaaaatatgtggaaggaattaagaaataatatccaaagttaaaagtataataagaaaagaaaggaaaatat |
16066629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 10453707 - 10453813
Alignment:
| Q |
22 |
aactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacataccaatgtaaatgactttggtgtagtaatatcgt |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||| | ||||||||||||||| |||| ||||||||||| |||||||||||||| || |
|
|
| T |
10453707 |
aactcaaggtggagctaatctcaagtgcaacttaatgtg--ttttttctattgtgacattgtatatacagatgtaaatgacactggtgtagtaatatagt |
10453804 |
T |
|
| Q |
122 |
attaaaatt |
130 |
Q |
| |
|
|||| |||| |
|
|
| T |
10453805 |
attagaatt |
10453813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 13543 - 13649
Alignment:
| Q |
22 |
aactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacataccaatgtaaatgactttggtgtagtaatatcgt |
121 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||| |||| | |||||||| |||| | |||| ||||||||||| |||||||||||||| || |
|
|
| T |
13543 |
aactcaaagtggagctaatctcaagtgcaacttaatgtg--ttttttctattgtgaaattgaatatacagatgtaaatgacactggtgtagtaatatagt |
13640 |
T |
|
| Q |
122 |
attaaaatt |
130 |
Q |
| |
|
|||| |||| |
|
|
| T |
13641 |
attagaatt |
13649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 12603399 - 12603305
Alignment:
| Q |
22 |
aactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacataccaatgtaaatgactttggtgtagtaatat |
118 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||| |||| | |||||||| |||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
12603399 |
aactcaaagtggagctaatctcaagtgcaacttaatgtg--ttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatat |
12603305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 52937220 - 52937291
Alignment:
| Q |
18 |
acaaaactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacatac |
89 |
Q |
| |
|
|||||||||| ||||||| ||||||||| || ||||||||||| ||||| | | |||||||||||| ||||| |
|
|
| T |
52937220 |
acaaaactcagggtggagctaatctcaaatgaagcttaatgtgtattttttcttttgtgacattgtgcatac |
52937291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 52944855 - 52944926
Alignment:
| Q |
18 |
acaaaactcaaggtggagttaatctcaagtgcagcttaatgtgaattttatgtattgtgacattgtacatac |
89 |
Q |
| |
|
|||||||||| ||||||| ||||||||| || ||||||||||| ||||| | | |||||||||||| ||||| |
|
|
| T |
52944855 |
acaaaactcagggtggagctaatctcaaatgaagcttaatgtgtattttttcttttgtgacattgtgcatac |
52944926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 8398559 - 8398475
Alignment:
| Q |
147 |
attactaacgaaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaaagaaacgcaaatat |
231 |
Q |
| |
|
||||||| | |||| ||||| ||||||| || ||| ||||||||||||||| || ||||||| |||||||||||| | |||||| |
|
|
| T |
8398559 |
attactatcaaaagaaaaatctgtggaagaaattgagaaataatatccaaagttaaaagtataataagaaaagaaatgaaaatat |
8398475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University