View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10077_high_6 (Length: 401)
Name: NF10077_high_6
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 40516219 - 40515855
Alignment:
| Q |
17 |
cagagatagggtaagacagtaacttagtacggatttgataggtcagctattttatagagaaagggttatatgtggggctggggctgctagaataatcaac |
116 |
Q |
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| T |
40516219 |
cagagataggataagacagtaacttagtacggatttgataggtcagctattttatagagaaagggttatatgtggggctggggctgctagaataatcaac |
40516120 |
T |
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| Q |
117 |
tttttactattcacatataagaaactactaaaaaataacagtgttcaggcttttgttgctgcttatgatacagattaattattattgtttatattattac |
216 |
Q |
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| T |
40516119 |
tttttactattcacatataagaaacta---aaaaataacagtgttcaggcttttgttgctgcttatgatacagattaattattattgtttatattattaa |
40516023 |
T |
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| Q |
217 |
agtgagtacagagagagatgcattttccccttcnnnnnnnctttcccttttggccccattccattgtcttgctatttattaaggtcatttatacatttgg |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40516022 |
agtgagtacagagagagatgcattttccccttctttttttcttttccttttggccccattccattgtcttgctatttattaaggtcatttatacatttgg |
40515923 |
T |
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| Q |
317 |
ctatattgcaggtgtacgaaatcctaagccactgataaaagccgaggaatgcggaattgctttactac |
384 |
Q |
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| T |
40515922 |
ctatattgcaggtgtacgaaatcctaagccactgataaaagccgaggaatgcggaattgctttactac |
40515855 |
T |
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