View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10077_high_7 (Length: 365)
Name: NF10077_high_7
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 349
Target Start/End: Original strand, 44258796 - 44259121
Alignment:
| Q |
22 |
cgtataacatgcattgtccatgccaattgaattaagcttactagtatcggtggaaagtgaattaaaagttaaagtatcattgtgaaagaaaaacatcata |
121 |
Q |
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| T |
44258796 |
cgtataacatgcattgtccatgtcaatcgaattaagcttactagtatccgtggaaagtgtattaaaaattaaagtaccattgtgaaagaaaaacatcata |
44258895 |
T |
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| Q |
122 |
atattttaagtaatcgaaagtatagaagatggagtagttagatggaataactatttaaataaatgaattttttacgggactatttaaataaatgatatag |
221 |
Q |
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| T |
44258896 |
atattttaagtaatcgaaagtatagaagatggagtagttagatggaataactatttaaataaatgaattttttacgggactatttaaataaatgatatag |
44258995 |
T |
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| Q |
222 |
tattatttnnnnnnnnnnnnnnnnctgtctttatattttaaagttacaaataatttaagatgaacaaatatttttaatataacatttatatcgctagaac |
321 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44258996 |
tattatttaaaataaaataaaaaactgtctttatattttaaagttacaaataatttaagatgaacaaatatttttaatataacatttatat--ctagaac |
44259093 |
T |
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| Q |
322 |
gtatatagaaatatttgaaccattaaat |
349 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44259094 |
gtatatagaaatatttgaaccattaaat |
44259121 |
T |
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