View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10077_low_12 (Length: 329)

Name: NF10077_low_12
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10077_low_12
NF10077_low_12
[»] chr1 (2 HSPs)
chr1 (1-311)||(6356765-6357075)
chr1 (160-209)||(50391935-50391983)
[»] chr4 (2 HSPs)
chr4 (157-209)||(22681171-22681222)
chr4 (165-208)||(11307624-11307666)
[»] chr8 (1 HSPs)
chr8 (157-209)||(19263310-19263361)
[»] chr3 (2 HSPs)
chr3 (157-209)||(50432-50483)
chr3 (159-207)||(51677364-51677411)
[»] scaffold0548 (1 HSPs)
scaffold0548 (165-208)||(4113-4155)
[»] scaffold1743 (1 HSPs)
scaffold1743 (157-209)||(194-245)
[»] chr5 (1 HSPs)
chr5 (160-208)||(28296072-28296119)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 6357075 - 6356765
Alignment:
Q  1 ataaagatcgtagagagacaaacaccaagattgtttaccactctctgattcacaatcaacgagtctttacaaagatacaaaagagtttaaaaaattaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6357075 ataaagatcgtagagagacaaacaccaagattgtttaccactctctgattcacaatcaacgagtctttacaaagatacaaaagagtttaaaaaattaatg 6356976  T
Q  101 ttcgacatgaacaaaccctaattcctacctttttctcttattaaaatatataaacaatatgactcatatacctcatgtcttaaaggttttgggtggagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6356975 ttcgacatgaacaaaccctaattcctacctttttctcttattaaaatatataaacaatatgactcatatacctcatgtcttaaaggttttgggtggagat 6356876  T
Q  201 gtggtgtcaccatctcgtggtcatggaatatttggacccgttgtttctcccgcaccccccaaaattcccaacagattctattgcaatgtgatatggattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  6356875 gtggtgtcaccatctcgtggtcatggaatatttggacccgttgtttctcccgcaccccccaaaatccccaacagattatattgcaatgtgatacggattg 6356776  T
Q  301 aacataagtcc 311  Q
    |||||||||||    
T  6356775 aacataagtcc 6356765  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 50391983 - 50391935
Alignment:
Q  160 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 209  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  50391983 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 50391935  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 22681222 - 22681171
Alignment:
Q  157 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 209  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  22681222 atatgactcatatacctaatgtcttaa-ggtttagggtggagatgtggtgtca 22681171  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 11307666 - 11307624
Alignment:
Q  165 catatacctcatgtcttaaaggttttgggtggagatgtggtgtc 208  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  11307666 catatacctcatgtcttaatg-ttttgggtggagatgtggtgtc 11307624  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 19263361 - 19263310
Alignment:
Q  157 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 209  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||||||||||    
T  19263361 atatgactcatatacctaatgtctt-aaggtttaggatggagatgtggtgtca 19263310  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 50432 - 50483
Alignment:
Q  157 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 209  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||||||||||    
T  50432 atatgactcatatacctaatgtctt-aaggtttgggatggagatgtggtgtca 50483  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 51677364 - 51677411
Alignment:
Q  159 atgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgt 207  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||    
T  51677364 atgactcatatacctaatgtcttggag-ttttgggtggagatgtggtgt 51677411  T

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Target: scaffold0548 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 4155 - 4113
Alignment:
Q  165 catatacctcatgtcttaaaggttttgggtggagatgtggtgtc 208  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  4155 catatacctcatgtcttaatg-ttttgggtggagatgtggtgtc 4113  T

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Target: scaffold1743 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 245 - 194
Alignment:
Q  157 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 209  Q
    |||||||||||||| || ||||||||| ||||| || ||||||||||||||||    
T  245 atatgactcatatatctaatgtcttaa-ggtttaggatggagatgtggtgtca 194  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 28296119 - 28296072
Alignment:
Q  160 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtc 208  Q
    |||| ||||||||| || |||||| ||||||||||||||||||||||||    
T  28296119 tgacccatatacctaatctcttaa-ggttttgggtggagatgtggtgtc 28296072  T

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