View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10077_low_13 (Length: 326)

Name: NF10077_low_13
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10077_low_13
NF10077_low_13
[»] chr7 (16 HSPs)
chr7 (19-251)||(8420042-8420274)
chr7 (22-146)||(8426454-8426578)
chr7 (237-312)||(33628285-33628360)
chr7 (232-289)||(43779795-43779852)
chr7 (233-308)||(14801990-14802065)
chr7 (233-308)||(15248982-15249057)
chr7 (234-305)||(45269483-45269554)
chr7 (235-305)||(11734275-11734345)
chr7 (235-305)||(16217038-16217108)
chr7 (235-305)||(29983235-29983305)
chr7 (236-305)||(10198308-10198377)
chr7 (232-305)||(33610587-33610660)
chr7 (272-312)||(8419993-8420033)
chr7 (232-308)||(31958664-31958740)
chr7 (233-269)||(34259343-34259379)
chr7 (233-305)||(36858131-36858203)
[»] chr1 (11 HSPs)
chr1 (235-312)||(50323330-50323407)
chr1 (225-305)||(45193232-45193312)
chr1 (235-312)||(31986111-31986188)
chr1 (235-305)||(44410712-44410782)
chr1 (235-312)||(37034904-37034981)
chr1 (233-305)||(42866276-42866348)
chr1 (233-288)||(3252224-3252279)
chr1 (230-305)||(19554227-19554302)
chr1 (235-305)||(33690159-33690229)
chr1 (235-280)||(18032287-18032332)
chr1 (235-312)||(28281976-28282053)
[»] chr2 (15 HSPs)
chr2 (233-308)||(37484401-37484476)
chr2 (232-312)||(21800709-21800789)
chr2 (234-305)||(35305329-35305400)
chr2 (235-305)||(32878747-32878817)
chr2 (235-312)||(12365559-12365636)
chr2 (235-298)||(7501379-7501442)
chr2 (235-305)||(16106748-16106818)
chr2 (235-305)||(17513020-17513090)
chr2 (235-305)||(24128753-24128823)
chr2 (235-305)||(30963032-30963102)
chr2 (235-312)||(3988705-3988782)
chr2 (235-312)||(6065537-6065614)
chr2 (234-299)||(12340395-12340460)
chr2 (232-305)||(23293219-23293292)
chr2 (235-312)||(37254860-37254937)
[»] chr5 (7 HSPs)
chr5 (232-305)||(18942246-18942319)
chr5 (235-304)||(23023853-23023922)
chr5 (233-305)||(814806-814878)
chr5 (232-312)||(6459704-6459784)
chr5 (235-312)||(23015033-23015110)
chr5 (261-298)||(43581722-43581759)
chr5 (261-293)||(38892723-38892755)
[»] chr3 (9 HSPs)
chr3 (236-305)||(11412525-11412594)
chr3 (235-298)||(27002522-27002585)
chr3 (234-312)||(51537215-51537293)
chr3 (235-305)||(55258117-55258187)
chr3 (235-312)||(35054735-35054812)
chr3 (233-298)||(51229550-51229615)
chr3 (234-269)||(42907768-42907803)
chr3 (235-285)||(42217214-42217264)
chr3 (235-305)||(45104144-45104214)
[»] scaffold0141 (1 HSPs)
scaffold0141 (51-132)||(11323-11406)
[»] chr6 (4 HSPs)
chr6 (233-305)||(6817288-6817360)
chr6 (234-298)||(21528881-21528945)
chr6 (235-291)||(23595691-23595747)
chr6 (237-312)||(31513399-31513474)
[»] chr4 (12 HSPs)
chr4 (235-305)||(4414415-4414485)
chr4 (235-312)||(25510487-25510564)
chr4 (235-305)||(25232704-25232774)
chr4 (235-312)||(2859419-2859496)
chr4 (235-308)||(6355000-6355073)
chr4 (235-312)||(8261061-8261138)
chr4 (235-312)||(8274478-8274555)
chr4 (261-312)||(41848979-41849030)
chr4 (235-305)||(24394073-24394143)
chr4 (235-288)||(8132791-8132844)
chr4 (235-312)||(44352087-44352164)
chr4 (233-305)||(1936540-1936612)
[»] scaffold0116 (1 HSPs)
scaffold0116 (235-305)||(7839-7909)
[»] chr8 (9 HSPs)
chr8 (235-305)||(36833904-36833974)
chr8 (235-312)||(43487516-43487593)
chr8 (235-305)||(19726746-19726816)
chr8 (235-305)||(42063462-42063532)
chr8 (232-305)||(20821829-20821902)
chr8 (232-305)||(31008568-31008641)
chr8 (236-305)||(44056535-44056604)
chr8 (235-291)||(3203212-3203267)
chr8 (233-305)||(41726391-41726463)
[»] scaffold0045 (1 HSPs)
scaffold0045 (235-304)||(29531-29600)
[»] scaffold0231 (1 HSPs)
scaffold0231 (235-305)||(11066-11136)
[»] scaffold0043 (1 HSPs)
scaffold0043 (235-312)||(64345-64422)
[»] scaffold0636 (1 HSPs)
scaffold0636 (232-304)||(1538-1610)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8420274 - 8420042
Alignment:
Q  19 gattggtatattttttcttatctcctttcatattcacgtaattctcatcatatcaaaggaaataggctaatacttgaagcatttgttgggtgattataat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8420274 gattggtatattttttcttatctcctttcatattcacgtaattctcatcatatcaaaggaaataggctaatacttgaagcatttgttgggtgattataat 8420175  T
Q  119 ttggttggttactcttgatctacttcacgttaaggtttgttttagattatcctttacaaatttttgggtaaattacctttcgctgatgtagactaattaa 218  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  8420174 ttggttggttactcttgatctacttcacattaaggttttttttagattatcctttacacatttttgggtaaattacctttcgctgatgtggactaattaa 8420075  T
Q  219 aatgaacaatgtgaaccatagttttaaaactcg 251  Q
    |||||||||||||||||||| ||||||||||||    
T  8420074 aatgaacaatgtgaaccatatttttaaaactcg 8420042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 8426578 - 8426454
Alignment:
Q  22 tggtatattttttcttatctcctttcatattcacgtaattctcatcatatcaaaggaaataggctaatacttgaagcatttgttgggtgattataatttg 121  Q
    ||||| ||||||||||||||||||  ||||||| |||||||||||| |||||||||||||  |||| ||||||||||||||| | | |||||||||||||    
T  8426578 tggtaaattttttcttatctccttatatattcatgtaattctcatcgtatcaaaggaaatgagctagtacttgaagcatttgatagatgattataatttg 8426479  T
Q  122 gttggttactcttgatctacttcac 146  Q
    |||||||||||  |||||| |||||    
T  8426478 gttggttactcacgatctagttcac 8426454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 33628360 - 33628285
Alignment:
Q  237 tagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||| |   | ||||||| | ||||||||||||||||||||| ||||  ||||||||||||    
T  33628360 tagttttaaaactcggctcggacattgactcggcaggggtactgagtcactgggtcaatggttgaaccattgggtc 33628285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 43779852 - 43779795
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgg 289  Q
    ||||||||||||||||||||| || ||  ||||||||||||||||| || ||||||||    
T  43779852 aaccatagttttaaaactcggatcggtgatcgactcggtaagggtattgggtcactgg 43779795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 14802065 - 14801990
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattg 308  Q
    ||||||||||||||||||||||| ||  |||||||||   |||||||  |||| ||||||| ||||| ||||||||    
T  14802065 accatagttttaaaactcggctcggtcatcgactcggcgggggtactaggtcaatgggtcaatggtcgaaccattg 14801990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 15249057 - 15248982
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattg 308  Q
    ||||||||||||||||||||||| ||  |||||||||   |||||||  |||| ||||||| ||||| ||||||||    
T  15249057 accatagttttaaaactcggctcggtcatcgactcggcgggggtactaggtcaatgggtcaatggtcgaaccattg 15248982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 45269554 - 45269483
Alignment:
Q  234 ccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||||||| ||  |||||||||    ||||||| |||||||||||| ||||| |||||    
T  45269554 ccatagttttaaaactcggctcggtcatcgactcggcggaggtactgggtcactgggtcaatggtcgaacca 45269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 11734345 - 11734275
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  11734345 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 11734275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 16217108 - 16217038
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||| | | ||||| || |||||||||||| ||||| |||||    
T  16217108 catagttttaaaactcggctcggtcatcgactcagcatgggtattgggtcactgggtcaatggtcgaacca 16217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 29983235 - 29983305
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||| || ||  ||||||||||  |||||||| |||| ||||||| ||||| |||||    
T  29983235 catagttttaaaactcggttcggtcatcgactcggtgggggtactgggtcaatgggtcaatggtcgaacca 29983305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 10198308 - 10198377
Alignment:
Q  236 atagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||||| ||  ||||||||| | ||||| ||  ||||||||||| ||||| |||||    
T  10198308 atagttttaaaactcggctcggtcatcgactcggcaggggtattggatcactgggtcaatggtcgaacca 10198377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 33610587 - 33610660
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||| || |||||||  || |||| ||||||||||| |||||||| || | ||||| |||||    
T  33610587 aaccatagttttaaaattctgctcagtcatcaactctgtaagggtactaagtcactgagttaatggtcgaacca 33610660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 8420033 - 8419993
Alignment:
Q  272 agggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||| || |||||||||||||||||| ||||||||||||    
T  8420033 agggtattgggtcactgggtcattggtcgaaccattgggtc 8419993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 31958740 - 31958664
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattg 308  Q
    |||||||||||||||| |||| || ||  |||||||||  | ||| ||| | |||||||||||||||| ||||||||    
T  31958740 aaccatagttttaaaaatcggatcggtgatcgactcggctaaggttctgggccactgggtcattggtcgaaccattg 31958664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 34259379 - 34259343
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcgg 269  Q
    ||||||||||||||||||||||| || ||||||||||    
T  34259379 accatagttttaaaactcggctcggtcgtcgactcgg 34259343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 36858131 - 36858203
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||||| ||  |||||||||   || ||||| |||| ||||||| ||||| |||||    
T  36858131 accatagttttaaaactcggctcggtcatcgactcggcggggatactgggtcaatgggtcaatggtcgaacca 36858203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 50323330 - 50323407
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||||| || |||||||||||||||||| ||||| |||||||||| ||||||| ||||||| ||||    
T  50323330 catagttttaaaactcggttcggttgtcgactcggtaaggatactgggtcactgggttattggtcgaaccattaggtc 50323407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 45193312 - 45193232
Alignment:
Q  225 caatgtgaaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||| |||| |||||||||||||||||||||  |  ||||||||| |||||| ||| |||||||||||||||||| |||||    
T  45193312 caatttgaatcatagttttaaaactcggctcgatcatcgactcggcaagggtgctgggtcactgggtcattggtcgaacca 45193232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 31986188 - 31986111
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  | || ||||||||||||||||| ||| |||||||| ||||||||  ||||| ||||||    
T  31986188 catagttttaaaactcggaccggtcgtcgactcggtaagggtgctgggtcactggttcattggttgaaccactgggtc 31986111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 44410712 - 44410782
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||| || ||  ||||||||| |||||||||| |||||||||| | ||||| |||||    
T  44410712 catagttttaaaactcggttcggtcatcgactcggcaagggtactgggtcactgggttaatggtcgaacca 44410782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 37034981 - 37034904
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||||||||  |  ||||||||| | |||||||| || ||||||||| ||||| ||||| ||||||    
T  37034981 catagttttaaaactcggctcgatcatcgactcggcatgggtactgggttactgggtcaatggtcgaaccactgggtc 37034904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 42866276 - 42866348
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  42866276 accatagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 42866348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 3252224 - 3252279
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactg 288  Q
    ||||||||||||||||||||||| ||  |||||||||||  ||||||| |||||||    
T  3252224 accatagttttaaaactcggctcggtcatcgactcggtagaggtactgggtcactg 3252279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 19554302 - 19554227
Alignment:
Q  230 tgaaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||||||||  |  |||||||||| ||| |||||  |||||| ||||||| || |||||    
T  19554302 tgaaccatagttttaaaactcggctcgatgatcgactcggtgaggttactggatcactgagtcattgatcgaacca 19554227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 33690159 - 33690229
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||| | |||||||| |||| ||||| | ||||| |||||    
T  33690159 catagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcattgggttaatggtcgaacca 33690229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 18032287 - 18032332
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactg 280  Q
    ||||||||||||||||||||| || |||||||||| | ||||||||    
T  18032287 catagttttaaaactcggctcggtcgtcgactcggcatgggtactg 18032332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 28281976 - 28282053
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  | ||  | |||||||| ||| ||||| ||||||| |||||||||  ||||||||||||    
T  28281976 catagttttaaaactcggaccggtcattgactcggtgaggttactgggtcactgagtcattggttgaaccattgggtc 28282053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 37484401 - 37484476
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattg 308  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| |||| ||||| |||| || ||||||||    
T  37484401 accatagttttaaaactcggctcggttgtcgactcggtaaggatactgggtcattgggttattgatcgaaccattg 37484476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 21800789 - 21800709
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||||||||||| ||  ||||||||||| |||||| | |||||||||||| ||||| || || ||||||    
T  21800789 aaccatagttttaaaactcggctcggtcatcgactcggtaggggtaccgggtcactgggtcaatggtcgaatcactgggtc 21800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 35305400 - 35305329
Alignment:
Q  234 ccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||||||| ||  ||||||||| | |||||||| |||||||||||| ||||| |||||    
T  35305400 ccatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcactgggtcaatggtcgaacca 35305329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 32878817 - 32878747
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| || ||||||||||   |||||||| ||| |||||||| ||||| |||||    
T  32878817 catagttttaaaactcggctcggtcgtcgactcggcgggggtactgggtccctgggtcaatggtcgaacca 32878747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 12365636 - 12365559
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  | || ||||| ||||| ||||||||| |||||||| | ||||||| ||||| ||||||    
T  12365636 catagttttaaaactcggaccggtcgtcgattcggttagggtactgggtcactggtttattggtcgaaccactgggtc 12365559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 7501379 - 7501442
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggt 298  Q
    ||||||||||||||||||  | ||  |||||||||| ||||||||| ||||| |||||||||||    
T  7501379 catagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagggtcattggt 7501442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 16106818 - 16106748
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||| ||| ||| || |||||||||| | ||||| |||||    
T  16106818 catagttttaaaactcggctcggtcatcgactcggcaagagtattgggtcactgggttaatggtcgaacca 16106748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 17513020 - 17513090
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  17513020 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 17513090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 24128753 - 24128823
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  24128753 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 24128823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 30963102 - 30963032
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||  | ||  ||||||||||||||||| |||| ||||| |||| ||||| |||||    
T  30963102 catagttttaaaactcggaccggtaatcgactcggtaagggtattgagacactgagtcaatggtcgaacca 30963032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 3988705 - 3988782
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||||| ||  | ||||||| | || ||||| |||| ||||||| ||||| || |||||||||    
T  3988705 catagttttaaaactcggctcggtcattgactcggcagggatactgggtcattgggtcaatggtcgaatcattgggtc 3988782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 6065614 - 6065537
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  | ||  |||| |||| | ||||||||||||||||||| | ||||| ||||| ||||||    
T  6065614 catagttttaaaactcggtccggtcatcgattcggcaggggtactgagtcactgggttaatggtcgaaccactgggtc 6065537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 12340395 - 12340460
Alignment:
Q  234 ccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtc 299  Q
    |||||||||||||||||||||| ||  | |||||||||| | ||||| |||| || ||||||||||    
T  12340395 ccatagttttaaaactcggctcggtgattgactcggtaatgttactgggtcaatgagtcattggtc 12340460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 23293292 - 23293219
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||||||||| ||  | |||||||  ||||||||| |||| ||||| | ||||| |||||    
T  23293292 aaccatagttttaaaactcggctcggtcattgactcggcgagggtactgggtcaatgggtgaatggtcgaacca 23293219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 37254937 - 37254860
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  | ||  | |||||||| ||| ||||| ||||||| |||||||||  ||||||||||||    
T  37254937 catagttttaaaactcggaccggtcattgactcggtgaggttactgggtcactgagtcattggttgaaccattgggtc 37254860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 18942246 - 18942319
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||||||||| ||  ||||||||||| |||||| | |||||||||||| ||||| |||||    
T  18942246 aaccatagttttaaaactcggctcggtcatcgactcggtaggggtaccgggtcactgggtcaatggtcgaacca 18942319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 23023853 - 23023922
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacc 304  Q
    |||||||||||||||||   | ||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  23023853 catagttttaaaactcgaaccggtgatcgactcggtaagggtactgagtcactgggtcattggtcgaacc 23023922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 814878 - 814806
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||| | || ||  |||||||||||||| |||||  ||||||||||| ||||| |||||    
T  814878 accatagttttaaaactcagatcggtgatcgactcggtaaggatactggatcactgggtcaatggtcgaacca 814806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 6459704 - 6459784
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||| |||| || |||||||||| | |||||||| |||| || || | ||||| ||||| ||||||    
T  6459704 aaccatagttttaaaactcagctcggtcgtcgactcggcatgggtactgggtcaatgagttaatggtcgaaccactgggtc 6459784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 23015033 - 23015110
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||| |||| || |   |||||||||| |  |||||| ||||||| |||||||||| ||||||||||||    
T  23015033 catagttttaaaaatcggatcggacatcgactcggtcaaagtactgggtcactgagtcattggtcgaaccattgggtc 23015110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 43581759 - 43581722
Alignment:
Q  261 tcgactcggtaagggtactgagtcactgggtcattggt 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  43581759 tcgactcggtaagagtactgagtcaatgggtcattggt 43581722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 38892755 - 38892723
Alignment:
Q  261 tcgactcggtaagggtactgagtcactgggtca 293  Q
    |||||||||||||||||||| ||||||||||||    
T  38892755 tcgactcggtaagggtactgggtcactgggtca 38892723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 11412594 - 11412525
Alignment:
Q  236 atagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||||| ||  ||||||||| ||||||| || |||||||||||||||||| |||||    
T  11412594 atagttttaaaactcggctcggtcatcgactcggcaagggtattgggtcactgggtcattggtcgaacca 11412525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 27002522 - 27002585
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggt 298  Q
    ||||||||||||||||||||| |   | ||||||| ||||||||||||||||||||||| ||||    
T  27002522 catagttttaaaactcggctcggacattgactcggcaagggtactgagtcactgggtcaatggt 27002585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 51537293 - 51537215
Alignment:
Q  234 ccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||||||||| ||  ||||||||| | ||||| || |||||||||| | ||||| ||||| ||||||    
T  51537293 ccatagttttaaaactcggctcggtcatcgactcggcaggggtattgggtcactgggttaatggtcgaaccactgggtc 51537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 55258187 - 55258117
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||||  |||||||| |||| ||||||| ||||| |||||    
T  55258187 catagttttaaaactcggctcggtcatcgactcggtgggggtactgggtcaatgggtcaatggtcgaacca 55258117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 35054812 - 35054735
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||||| ||  ||||||||| | |||||||| |||| || || | ||||| ||||||||||||    
T  35054812 catagttttaaaactcggctcggtcatcgactcggcatgggtactgggtcagtgagttaatggtcgaaccattgggtc 35054735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 51229615 - 51229550
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggt 298  Q
    ||||||||||||||||||||  | ||  |||||||||| ||||||||| ||||| |||||||||||    
T  51229615 accatagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagggtcattggt 51229550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 269
Target Start/End: Original strand, 42907768 - 42907803
Alignment:
Q  234 ccatagttttaaaactcggctcagttgtcgactcgg 269  Q
    |||||||||||||||||||||| |||||||||||||    
T  42907768 ccatagttttaaaactcggctcggttgtcgactcgg 42907803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 42217264 - 42217214
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtca 285  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||| ||||    
T  42217264 catagttttaaaactcggctcggtcatcgactcggtaaaggtactgggtca 42217214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 45104214 - 45104144
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||  | ||  |||| |||||||| |||||| |||||||||||| ||||| |||||    
T  45104214 catagttttaaaactcggaccggtgatcgaatcggtaagagtactgggtcactgggtcaatggtcgaacca 45104144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 11323 - 11406
Alignment:
Q  51 ttcacgtaattctcatcatatcaaaggaaataggctaatacttgaa--gcatttgttgggtgattataatttggttggttactc 132  Q
    |||| |||||||||||| |||||||||||||| |||  ||||||||  ||||||||| | ||||||||| ||||||||||||||    
T  11323 ttcaagtaattctcatcgtatcaaaggaaataagctggtacttgaagtgcatttgttagatgattataaattggttggttactc 11406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 6817288 - 6817360
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||| |||| ||||| | ||||| |||||    
T  6817288 accatagttttaaaactcggctcggtcatcgactcggtaagggtactgggtcattgggttaatggtcgaacca 6817360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 21528945 - 21528881
Alignment:
Q  234 ccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggt 298  Q
    |||||||||||||||||||  | ||  |||||||||| ||||||||| ||||| |||||||||||    
T  21528945 ccatagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagggtcattggt 21528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 23595691 - 23595747
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggt 291  Q
    ||||||||||||||||||||| ||  ||||||||| | |||||||| ||||||||||    
T  23595691 catagttttaaaactcggctcggtgatcgactcggcaggggtactgggtcactgggt 23595747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 31513474 - 31513399
Alignment:
Q  237 tagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||| |   | ||||||| | ||||||||||||| ||||||| ||||  ||||||||||||    
T  31513474 tagttttaaaactcggctcggacattgactcggaaggggtactgagtcaatgggtcaatggttgaaccattgggtc 31513399  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 4414415 - 4414485
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||| | |||||||| |||||||||||| ||||| |||||    
T  4414415 catagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcactgggtcaatggtcgaacca 4414485  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 25510487 - 25510564
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  | || ||||||||||||||||| ||| |||||||| ||||||||  ||||| ||||||    
T  25510487 catagttttaaaactcggaccggtcgtcgactcggtaagggtgctgggtcactggttcattggttgaaccactgggtc 25510564  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 25232774 - 25232704
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||| | |||||||| |||| ||||||| ||||| |||||    
T  25232774 catagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcaatgggtcaatggtcgaacca 25232704  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 2859419 - 2859496
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||| |  | ||  ||||||||||||||||| || |||||||||||| ||||| ||||| ||||||    
T  2859419 catagttttaaaactcagaccggtgatcgactcggtaagggtattgggtcactgggtcaatggtcgaaccactgggtc 2859496  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 6355073 - 6355000
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattg 308  Q
    ||||||||||||||||||||| ||  |||||||| ||  ||| |||||||||||||| | ||||| ||||||||    
T  6355073 catagttttaaaactcggctcggtcatcgactcgatagaggttctgagtcactgggttaatggtcgaaccattg 6355000  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 8261138 - 8261061
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||||  |   | ||||||||| |||| |||||||||||||||| ||||  ||||||||||||    
T  8261138 catagttttaaaactcggcttggacattgactcggtaggggtgctgagtcactgggtcaatggttgaaccattgggtc 8261061  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 8274555 - 8274478
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||||  |   | ||||||||| |||| |||||||||||||||| ||||  ||||||||||||    
T  8274555 catagttttaaaactcggcttggacattgactcggtaggggtgctgagtcactgggtcaatggttgaaccattgggtc 8274478  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 41848979 - 41849030
Alignment:
Q  261 tcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||||||| |||||||||||| ||||| ||  ||||||||    
T  41848979 tcgactcggtaagggtactgggtcactgggtcaatggtcgaattattgggtc 41849030  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 24394073 - 24394143
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||| |||||||||||||||| ||  |||||||||   |||||||| |||||||||||| ||||| |||||    
T  24394073 cataattttaaaactcggctcggtcatcgactcggcgggggtactgggtcactgggtcaatggtcgaacca 24394143  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 8132791 - 8132844
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactg 288  Q
    ||||||||||||||||||||| ||  |||||||||||  ||||||| |||||||    
T  8132791 catagttttaaaactcggctcggtcatcgactcggtagaggtactgggtcactg 8132844  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 44352087 - 44352164
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    |||||||||||||||||| || ||  ||||||||| |  ||||||| ||||||| |||  ||||| ||||||||||||    
T  44352087 catagttttaaaactcggttcggtcatcgactcggcataggtactgggtcactgagtcgatggtcgaaccattgggtc 44352164  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 1936612 - 1936540
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||| || ||| ||  ||||||||| | |||||||| |||| ||||||| ||||| |||||    
T  1936612 accatagttttaaaacccgactcggtcatcgactcggcaggggtactgggtcaatgggtcaatggtcgaacca 1936540  T

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Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 7839 - 7909
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||| || |||||||||||| ||||| | ||||| |||||    
T  7839 catagttttaaaactcggctcggtcatcgactcggcaaaggtactgagtcattgggttaatggtcgaacca 7909  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 36833904 - 36833974
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  ||||||||| | |||||||| |||| ||||||| ||||| |||||    
T  36833904 catagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcattgggtcaatggtcgaacca 36833974  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 43487593 - 43487516
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||  ||||  |||||||||| |||||| |||||||||| |||| | ||| ||||||| ||||    
T  43487593 catagttttaaaactcggaccagtcatcgactcggtgagggtattgagtcactgagtcaatagtcgaaccattaggtc 43487516  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 19726816 - 19726746
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  19726816 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 19726746  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 42063462 - 42063532
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  42063462 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 42063532  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 20821902 - 20821829
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||||| ||||  |   ||||||||| |||| |||||||||||||||| | ||||| |||||    
T  20821902 aaccatagttttaaaacttggcttggccatcgactcggcaaggatactgagtcactgggttaatggtcgaacca 20821829  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 31008641 - 31008568
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    |||||||||||||||| |||| || ||  |||||||||   ||||||||||||| ||||||| ||||| |||||    
T  31008641 aaccatagttttaaaattcggttcggtcatcgactcggcgggggtactgagtcaatgggtcaatggtcgaacca 31008568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 44056604 - 44056535
Alignment:
Q  236 atagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||| ||||  |  ||||||||| | ||||||||| ||||||||||| ||||| |||||    
T  44056604 atagttttaaaactcagctcgatcatcgactcggcaggggtactgaatcactgggtcaatggtcgaacca 44056535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 3203267 - 3203212
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggt 291  Q
    |||| |||||||||||||||||||  |||||||||  |||||||||||||| |||||    
T  3203267 cataattttaaaactcggctcagtgatcgactcgg-cagggtactgagtcattgggt 3203212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 41726463 - 41726391
Alignment:
Q  233 accatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||||| ||  |||||||||    ||||||| |||| ||||||| ||||| |||||    
T  41726463 accatagttttaaaactcggctcggtcatcgactcggcggaggtactgggtcaatgggtcaatggtcgaacca 41726391  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 29600 - 29531
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacc 304  Q
    |||||||||||||||| |||| ||  |||| ||||| ||| ||||| ||||||| |||||||||||||||    
T  29600 catagttttaaaactcagctcggtgatcgattcggtgaggttactgggtcactgagtcattggtcaaacc 29531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 11136 - 11066
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacca 305  Q
    ||||||||||||||||||||| ||  |||||||||   |||||||| |||| ||||||| ||||| |||||    
T  11136 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaacca 11066  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 64345 - 64422
Alignment:
Q  235 catagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaaccattgggtc 312  Q
    ||||||||||||||||||||| ||  ||||||||  |  ||||||| ||||||| |||  ||||| ||||||||||||    
T  64345 catagttttaaaactcggctcggtcatcgactcgacataggtactgggtcactgagtcgatggtcgaaccattgggtc 64422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 1538 - 1610
Alignment:
Q  232 aaccatagttttaaaactcggctcagttgtcgactcggtaagggtactgagtcactgggtcattggtcaaacc 304  Q
    |||||||||||||||||||||  | ||  |||||||||| || ||| || |||||| ||||||||||| ||||    
T  1538 aaccatagttttaaaactcggaccggtcatcgactcggtgagtgtagtgggtcactaggtcattggtcgaacc 1610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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