View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10077_low_16 (Length: 299)
Name: NF10077_low_16
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_16 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 30320118 - 30320343
Alignment:
| Q |
18 |
caaacaatagcaagaattatacacccctaacatgacaattnnnnnnntgattaataagaagtctacaaattcatccattagattgattagaattaaaacg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30320118 |
caaataatagcaagaattatacacccctaacatgacaattaaaaaaatgattaataagaagtctacaaattcatccattagatcgattagaattaaaacg |
30320217 |
T |
|
| Q |
118 |
aaatcaatgtatgttataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaac-nnnnnnnnnnggagatattatcacttca |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30320218 |
aaatcaatgtatattataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaacaaaaaaaagaaggagatattatcacttca |
30320317 |
T |
|
| Q |
217 |
caaataaatcaaaacaaaacttctac |
242 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
30320318 |
caaataaatcaaaacaaaacttctac |
30320343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 2345282 - 2345510
Alignment:
| Q |
18 |
caaacaatagcaagaattatacacccctaacatgacaattnnnnnnn--tgattaataagaagtctacaaattcatccattagattgattagaattaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
2345282 |
caaacaatagcaagaattatacacccctaacatgacaattaaaaaaaaatgattaataagaagtcttcaaattcatccattagatcgattagaattaaaa |
2345381 |
T |
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| Q |
116 |
cgaaatcaatgtatgttataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaac-nnnnnnnnnnggagatattatcactt |
214 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2345382 |
cgaaatcaatgtatattataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaacaaaaaaaaaaaggagatattatcactt |
2345481 |
T |
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| Q |
215 |
cacaaataaatcaaaacaaaacttctacc |
243 |
Q |
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| T |
2345482 |
cacaaataaatcaaaacaaaacttctacc |
2345510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 25336709 - 25336491
Alignment:
| Q |
18 |
caaacaatagcaagaattatacacccctaacatgacaattnnnnnnntgattaataagaagtctacaaattcatccattagattgattagaattaaaacg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25336709 |
caaacaatagcaagaattatacacccctaacatgacaattaaaaaaatgattaataagaagtctacaaattcatccattagatcgattagaattaaaacg |
25336610 |
T |
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| Q |
118 |
aaatcaatgtatgttataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaacnnnnnnnnnnggagatattatcacttcac |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25336609 |
aaatcaatgtatattataatttttaaaaatgattagt-------aagattggaagattgtgttgtaccaacaaaaaaaaaaggagatattatcacttcac |
25336517 |
T |
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| Q |
218 |
aaataaatcaaaacaaaacttctacc |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25336516 |
aaataaatcaaaacaaaacttctacc |
25336491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 3647730 - 3647944
Alignment:
| Q |
18 |
caaacaatagcaagaattatacacccctaacatgacaattnnnnnnntgattaataagaagtctacaaattcatccattagattgattagaattaaaacg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
3647730 |
caaacaatagcaagaattatacacccctaacatgacaattaaaaaaatgattaataatt-gtctacaaattcatccattagatcgattagaattaaaacg |
3647828 |
T |
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| Q |
118 |
aaatcaatgtatgttataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaacnnnnnnnnnnggagatattatcacttcac |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
3647829 |
aaatcaatgtatattataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccgacaaaaaaaaaaggagatattatcatttcac |
3647928 |
T |
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| Q |
218 |
aaataaatcaaaacaa |
233 |
Q |
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|||||||||||||||| |
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| T |
3647929 |
aaataaatcaaaacaa |
3647944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 36506 - 36355
Alignment:
| Q |
18 |
caaacaatagcaagaattatacacccctaacatgacaattnnnnnnntgattaataagaagtctacaaattcatccattagattgattagaattaaaacg |
117 |
Q |
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|||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
36506 |
caaacaatagcaagaattatacacccctaatacaacaattaaaaaa-tgattaataagaagtctacaaattcattcattaga---------attaaaacg |
36417 |
T |
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| Q |
118 |
aaatcaatgtatgttataatttttaaaaatgattagtaagaagtaagaatggaagattgtgttgtaccaac |
188 |
Q |
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|||| ||| |||||||||||||||||| || |||||||||||| ||||||||| |||||||| |
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| T |
36416 |
aaattaat---------aatttttaaaaatgattaatatgaagtaagaatgacagattgtgtagtaccaac |
36355 |
T |
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