View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10077_low_20 (Length: 242)
Name: NF10077_low_20
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27929114 - 27929336
Alignment:
| Q |
1 |
aggatacatatggagaagacttctcatcaagattcttgaatatgccttttctccccgttgaggtatgttttgcttacattttaacagcatgccgattaat |
100 |
Q |
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| T |
27929114 |
aggatacatatggagaagacctctcatcaagattcttgaatatgccttttctccccgttgaggtatgttttgcttacattttaacagcatgctgattaat |
27929213 |
T |
|
| Q |
101 |
atcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttaattggcctaaactttgtcgctttttgaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27929214 |
atcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttatttggcctaaactttgtcgctttttgaatt |
27929313 |
T |
|
| Q |
201 |
tatttctcgcctatctctggctg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
27929314 |
tatttctcgcctatctctggctg |
27929336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28082723 - 28082501
Alignment:
| Q |
1 |
aggatacatatggagaagacttctcatcaagattcttgaatatgccttttctccccgttgaggtatgttttgcttacattttaacagcatgccgattaat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
28082723 |
aggatacatatggagaagacctctcatcaagattctttaatatgcattttctccccgttgaggtatgtcttgcttacattttaacagcatgctgattaat |
28082624 |
T |
|
| Q |
101 |
atcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttaattggcctaaactttgtcgctttttgaatt |
200 |
Q |
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| T |
28082623 |
atcagagacaattattctttctttaaacatttctttttgctcaattgttttctttttgcaagtcccattatttggcctaaactttgtcgctttttgaatt |
28082524 |
T |
|
| Q |
201 |
tatttctcgcctatctctggctg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28082523 |
tatttctcgcctatctctggctg |
28082501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 27935043 - 27935177
Alignment:
| Q |
5 |
tacatatggagaagacttctcatcaagattcttgaatatgccttttctccccgttgaggtatgttttgcttacattttaacagcatgccgattaatatca |
104 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||| |||||||| | || ||||| ||||||||||||| ||||||||| |||||| | || |
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| T |
27935043 |
tacatgtggagaagacctctcatcaagattcttgaatatgcgttttctccaagctgcggtattacttgcttacattttcacagcatgctgattaaaacca |
27935142 |
T |
|
| Q |
105 |
gagacaattattctttctttaaacatttatttttg |
139 |
Q |
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||||||| ||||||||| || ||||||| |||||| |
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| T |
27935143 |
gagacaaatattctttcgtttaacatttctttttg |
27935177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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