View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10077_low_22 (Length: 231)
Name: NF10077_low_22
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 44911676 - 44911828
Alignment:
| Q |
17 |
acagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggtt |
116 |
Q |
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| T |
44911676 |
acagagggtcaggaatttaactaccataaaacatccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattaggtt |
44911775 |
T |
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| Q |
117 |
catcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatgg |
169 |
Q |
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| T |
44911776 |
catcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatgg |
44911828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 3769156 - 3768993
Alignment:
| Q |
16 |
cacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggt |
115 |
Q |
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| T |
3769156 |
cacagggggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcatttggt |
3769057 |
T |
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| Q |
116 |
tcatcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa |
179 |
Q |
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| T |
3769056 |
tcatcgtcatcacagcaacaccaacccctcttgtttcataccttcttcccatggattgtgtcaa |
3768993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 3768615 - 3768577
Alignment:
| Q |
178 |
aacaagcatttgcaacaaaactctttgctggttgtttct |
216 |
Q |
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| T |
3768615 |
aacaagcatttgcaacaaaactctttgctggttgtttct |
3768577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 3928561 - 3928724
Alignment:
| Q |
16 |
cacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggt |
115 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
3928561 |
cacagagggtcaggaatttaactaccatagaaccttcaatttaccgttcatgtcattcatctatcttccatcttctcgtttctattaattttcattcggt |
3928660 |
T |
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| Q |
116 |
tcatcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa |
179 |
Q |
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| T |
3928661 |
tcatcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatagattgtgtcaa |
3928724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6353914 - 6354074
Alignment:
| Q |
19 |
agagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttca |
118 |
Q |
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||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
6353914 |
agagggtcatgaattaaactaccatagaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattcggttca |
6354013 |
T |
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| Q |
119 |
tcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa |
179 |
Q |
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| T |
6354014 |
tcgtcatcacaacaacaccaacccatcttgtttcataccttcttcccatggattgtgtcaa |
6354074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 6354454 - 6354492
Alignment:
| Q |
178 |
aacaagcatttgcaacaaaactctttgctggttgtttct |
216 |
Q |
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| T |
6354454 |
aacaagcatttgcaacaaaactctttgctggttgtttct |
6354492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 30372929 - 30372845
Alignment:
| Q |
21 |
agggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaatt |
105 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30372929 |
agggtcaggaatttaactaccatagatcctccaatttaccgttcatgtcattcatctatcttccatcttctcgtttctattaatt |
30372845 |
T |
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