View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10077_low_25 (Length: 223)
Name: NF10077_low_25
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_25 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27928886 - 27929108
Alignment:
| Q |
1 |
gtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcggtgtccattttgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27928886 |
gtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcagtgtccattttgtc |
27928985 |
T |
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| Q |
101 |
aactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctgaaattgacagttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27928986 |
aactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctgaaattgacagttat |
27929085 |
T |
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| Q |
201 |
ttgtctgaagaatggaaagatag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
27929086 |
ttgtctgaagaatggaaagatag |
27929108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28082951 - 28082729
Alignment:
| Q |
1 |
gtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcggtgtccattttgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28082951 |
gtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcagtgtccattttgtc |
28082852 |
T |
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| Q |
101 |
aactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctgaaattgacagttat |
200 |
Q |
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| T |
28082851 |
aactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataatcaaccatcttctgaaattgacagttat |
28082752 |
T |
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| Q |
201 |
ttgtctgaagaatggaaagatag |
223 |
Q |
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| T |
28082751 |
ttgtctgaagaatggaaagatag |
28082729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27934815 - 27934955
Alignment:
| Q |
1 |
gtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcggtgtccattttgtc |
100 |
Q |
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|||||||||| |||||||||||||| |||||||||||| |||||||||| | ||| |||||||| |||| |||| || ||| ||||||||| |||| |
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| T |
27934815 |
gtctgaaagatcttgtgcaaaggta-ttttgagcttctcaatgacacttccatgccttaaatttgcttc---actttctctaatcagtgtccattgtgtc |
27934910 |
T |
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| Q |
101 |
aactgttactttgctactccttaaatgtgtttgtattattacttt |
145 |
Q |
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|||| ||||||||||||||| ||||| | |||||||||| ||||| |
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| T |
27934911 |
aactattactttgctactccgtaaatttatttgtattatcacttt |
27934955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 27934989 - 27935030
Alignment:
| Q |
179 |
atcttctgaaattgacagttatttgtctgaagaatggaaaga |
220 |
Q |
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||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
27934989 |
atcatctgaaatttacagttatttgtgtgaagaatggaaaga |
27935030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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