View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10077_low_3 (Length: 518)
Name: NF10077_low_3
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 5 - 502
Target Start/End: Complemental strand, 34897352 - 34896856
Alignment:
| Q |
5 |
ttcaatcatctttt-ggctgatgcaatcaactttatggttaacaaatatttcacctatcagctcatcaaataaaaacacagtcttaaagaaaacccaaaa |
103 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897352 |
ttcaatcatctttttggctgatgcaatcaactttatcattaacaaatatttcacctatcagctcatcaaataaaaacacagtcttaaagaaaacccaaaa |
34897253 |
T |
|
| Q |
104 |
ttatatatcacacggcaaaaaataactatttcaccaagcttatggaatccaaatcatagaaaatatattagtgcataattagtaatcatgttttagctat |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897252 |
ttatatatcacacggcaaaatataactatttcaccaagcttatggaatccaaatcatagaaaatatattagtgcataattagtaatcatgttttagctat |
34897153 |
T |
|
| Q |
204 |
catattcaggaatcacacacagccatatat--atatttgttgcctcttcaaacttttgacgcatatattaaataaagtaaatcagatgtggtatctttta |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897152 |
catattcaggaatcacacacagtcatatatatatatttgttgcctcttcaaacttttgacgcatatattaaataaagtaaatcagatgtggtatctttta |
34897053 |
T |
|
| Q |
302 |
tcttgtcgtttgatatataatagcttgaccccattgattagtataaagtcaatcaatgtaaaaagccatatgaaatttgtattttcttgccccggtcctg |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34897052 |
tcttgtcgtttg----ataatagcttgaccccattgattagtataaagtcaatcaatgtaaaaagccatatgaaatttggattttcttgccacggtcctg |
34896957 |
T |
|
| Q |
402 |
actcttgtttttactttttgttcaagaaatttcccaaccattcattattcaaaccccgaggaggacaaattcagattccattttataagtttgcatttac |
501 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896956 |
actcctgtttttactttttgttcaagaaatttcccaaccattcattattcaaaccccgaggaggacaaattcagattccattttataagtttgcatttac |
34896857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University