View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10077_low_7 (Length: 412)
Name: NF10077_low_7
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 177 - 401
Target Start/End: Original strand, 39092904 - 39093128
Alignment:
| Q |
177 |
aaatacagggcaaaatcaaagtttgtgaagaataattccccttgtagacacataaaacaacagtaaagagacttaaataaaactcttaatagaatacgtg |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
39092904 |
aaatacaggccaaaatcaaagtttgtgaagaataattccccttgtagacacctaaaacaacaataaagagacttaaataaaactcttaatagaatacatg |
39093003 |
T |
|
| Q |
277 |
ttaaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaataaaacaacaaaagattctcac |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39093004 |
ttaaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaagaaaacaacaaaagattctcac |
39093103 |
T |
|
| Q |
377 |
gaccataatactttatgcaactctg |
401 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
39093104 |
gaccttaatactttatgcaactctg |
39093128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 39092691 - 39092851
Alignment:
| Q |
18 |
gctcgaatattatttactagagtactacactcatgcatctcatgtatcagaaataatatcttatgttgtttcaattaaaaaactataaaagcaaaacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092691 |
gctcgaatattatttactagagtactacactcatgcatctcatgtatcagaaataatatcttatgttgtttcaattaaaaaactataaaagcaaaacaac |
39092790 |
T |
|
| Q |
118 |
ttctttgtaacacacacatgggttttgatatgataacttaaagcacacctaagactgagaa |
178 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092791 |
ttctttgtaactcacacatgggttttgatatgataacttaaagcacacctaagactgagaa |
39092851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University