View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10077_low_9 (Length: 376)
Name: NF10077_low_9
Description: NF10077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10077_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 358
Target Start/End: Complemental strand, 39696452 - 39696119
Alignment:
| Q |
29 |
gttgaataaaaggggttacacctctgaatgttgaattttctatgttaacttcactaattttctaaattagaatcataaattaacttcactaattt----c |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39696452 |
gttgaataaaaggggttacacctctgaatgttgaattttctatgttaacttcactaattttctaaattagaatcataaattaacttcactaatttatttc |
39696353 |
T |
|
| Q |
125 |
ctcatcttataaattttatgatgcaaagaaacaacaatcaagttctatctcagaatgaactaattatttagactttaactgaaaatgcactaattgatca |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39696352 |
ctcatcttataaattttatgatgcaaagaaacaacaataaagttctatctcagaatgaactaattatttagactttaactgaaaatgcactaattgatca |
39696253 |
T |
|
| Q |
225 |
actttgtaaaatagttacaagtaaaagaaatttgagatcttttcatacatataataaccaaatcttaaactctagacgtttgacgcactcaagacattga |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39696252 |
actttgtaaaatagttacaagtaaaagaaatttgagatcttttcatacatataataaccaaatcttaaactctagacgtttggcgcactcaagacattga |
39696153 |
T |
|
| Q |
325 |
atggtcgatgagttattggttacacctccgtctt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
39696152 |
atggtcgatgagttattggttacacctccatctt |
39696119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University