View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10078_high_2 (Length: 554)

Name: NF10078_high_2
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10078_high_2
NF10078_high_2
[»] chr3 (2 HSPs)
chr3 (5-536)||(43489692-43490223)
chr3 (38-153)||(45013921-45014036)
[»] chr8 (2 HSPs)
chr8 (17-203)||(38653101-38653287)
chr8 (29-75)||(41747949-41747995)
[»] chr1 (1 HSPs)
chr1 (17-202)||(44331736-44331921)
[»] chr6 (3 HSPs)
chr6 (22-203)||(13409874-13410055)
chr6 (26-153)||(10554595-10554722)
chr6 (91-154)||(4038752-4038815)
[»] chr7 (3 HSPs)
chr7 (26-125)||(6568891-6568990)
chr7 (26-125)||(6583050-6583149)
chr7 (91-153)||(3160284-3160346)
[»] chr4 (4 HSPs)
chr4 (90-150)||(1726250-1726310)
chr4 (98-150)||(2428679-2428731)
chr4 (26-69)||(33718963-33719006)
chr4 (23-69)||(33720979-33721025)
[»] chr2 (2 HSPs)
chr2 (98-150)||(44648686-44648738)
chr2 (26-79)||(4068217-4068270)
[»] chr5 (1 HSPs)
chr5 (20-75)||(2361310-2361365)


Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 5 - 536
Target Start/End: Complemental strand, 43490223 - 43489692
Alignment:
Q  5 ggagaagcagagagaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttag 104  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490223 ggagaagcaaagagaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttag 43490124  T
Q  105 gaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgttac 204  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490123 gaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgttac 43490024  T
Q  205 acttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcaccgagttcgattgtttctattacaacttctactgatcctgttgtt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490023 acttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcaccgagttcgattgtttctattacaacttctactgatcctgttgtt 43489924  T
Q  305 catactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtattcctgctccaaggaatatttatgatgata 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  43489923 catactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtattcctcctgcaaggaatgtttatgatgata 43489824  T
Q  405 atgtgattagggcttcttctgtggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctat 504  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489823 atgtgattagggcttcttctatggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctat 43489724  T
Q  505 gcagggcaatacttcagtttcctcgtattttt 536  Q
    ||||||||||||||||||||||||||||||||    
T  43489723 gcagggcaatacttcagtttcctcgtattttt 43489692  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 45014036 - 45013921
Alignment:
Q  38 cagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagag 137  Q
    ||||| ||||||||||| ||||| ||||||||  | |||||    || || ||||| |||||| |||||||||||||||| ||||| ||||| ||    |    
T  45014036 cagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggtatggctaggaacatttgaaacggctgaggctgcagccgttg 45013937  T
Q  138 catatgatgaagctgc 153  Q
    ||||||||||||||||    
T  45013936 catatgatgaagctgc 45013921  T

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Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 38653287 - 38653101
Alignment:
Q  17 agaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||    
T  38653287 agaaaatacagaggagtaagacagaggccatggggaaaatgggcagcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaa 38653188  T
Q  117 cagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtta 203  Q
    ||||||||| ||| |||| ||| |||||| ||||| |  | ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  38653187 cagctgaagatgcagctaaagcctatgatcaagcttcattgcgttttagaggaaacaaagcaaaactcaacttccctgaaaatgtta 38653101  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 41747949 - 41747995
Alignment:
Q  29 ggagtaagacagagaccatggggaaaatgggcagcagagataagaga 75  Q
    ||||| ||||||||||| |||||||||||||| || |||||||||||    
T  41747949 ggagtgagacagagaccttggggaaaatgggcggcggagataagaga 41747995  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 44331921 - 44331736
Alignment:
Q  17 agaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaa 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||  ||||||||||||||||||| | |||||||||||||    
T  44331921 agaagatacagaggagtaagacagagaccatggggaaaatgggcagcagaaattcgagatccacacaaagcagcaagagtatggcttggaacatttgaaa 44331822  T
Q  117 cagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtt 202  Q
    | || |||||||| || ||||| || |||||||||||  |  | || ||||| |||| ||| |||||||| |||||||||||||||    
T  44331821 ctgcagaagctgcagcaagagcttacgatgaagctgcattaagattcagaggaaacagagcgaaactcaacttccctgaaaatgtt 44331736  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 13409874 - 13410055
Alignment:
Q  22 atacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagct 121  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||  |||||||  |||||||||| |||||||||| || |||||     
T  13409874 atacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagca 13409973  T
Q  122 gaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtta 203  Q
    |||||||| ||||| || ||||||||||||||  |  | || ||||| | || ||| |||||||| ||||||||||||||||    
T  13409974 gaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgtta 13410055  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 10554595 - 10554722
Alignment:
Q  26 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaag 125  Q
    ||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||    |||| ||||||||| ||| | || || ||||||||||||||||    
T  10554595 agaggtgtaaggcaaagaccttgggggaaatgggcagctgaaataagagatcctaaaaaaggagcaagagtgtggcttggcacctttgaaacagctgaag 10554694  T
Q  126 ctgctgctagagcatatgatgaagctgc 153  Q
    |||| ||||  || ||||||||||||||    
T  10554695 ctgcagctactgcttatgatgaagctgc 10554722  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 4038752 - 4038815
Alignment:
Q  91 aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgct 154  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||||||||| |||||||| ||||||    
T  4038752 aagagtttggttaggaacttttgatacagctgaagaagctgctagagcttatgatgaggctgct 4038815  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 6568891 - 6568990
Alignment:
Q  26 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaag 125  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| | || |||   |||||||| ||||| ||||||||||||||||| ||||||||||    
T  6568891 agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgatacagctgaag 6568990  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 6583050 - 6583149
Alignment:
Q  26 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaag 125  Q
    |||||||| ||||| ||||||||||||||||||||||| || ||| | || |||   |||||||| ||||| ||||||||||||||||| ||||||||||    
T  6583050 agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgacacagctgaag 6583149  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 3160284 - 3160346
Alignment:
Q  91 aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc 153  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||| ||||| ||||||||||||||    
T  3160284 aagagtttggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagctgc 3160346  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 1726250 - 1726310
Alignment:
Q  90 caagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 150  Q
    ||||| ||||||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  1726250 caagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 1726310  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 2428731 - 2428679
Alignment:
Q  98 tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 150  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  2428731 tggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagc 2428679  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 33718963 - 33719006
Alignment:
Q  26 agaggagtaagacagagaccatggggaaaatgggcagcagagat 69  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  33718963 agaggagtgagacagagaccatggggaaaatgggctgctgagat 33719006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 33720979 - 33721025
Alignment:
Q  23 tacagaggagtaagacagagaccatggggaaaatgggcagcagagat 69  Q
    ||||||||||| || ||||||||||||||||||||||| || |||||    
T  33720979 tacagaggagtgaggcagagaccatggggaaaatgggctgctgagat 33721025  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 44648738 - 44648686
Alignment:
Q  98 tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 150  Q
    ||||||||||||||||||||||||||||  || |||| |||||||||||||||    
T  44648738 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 44648686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 4068270 - 4068217
Alignment:
Q  26 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatcca 79  Q
    |||||||||||| ||||||||||||||| ||  || || |||||||||||||||    
T  4068270 agaggagtaagaaagagaccatggggaagatacgccgcggagataagagatcca 4068217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 2361365 - 2361310
Alignment:
Q  20 aaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagaga 75  Q
    |||||| | ||||| || ||||||||||||||||||||||| || |||||||||||    
T  2361365 aaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagaga 2361310  T

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