View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10078_high_8 (Length: 397)

Name: NF10078_high_8
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10078_high_8
NF10078_high_8
[»] chr6 (3 HSPs)
chr6 (206-271)||(27141890-27141955)
chr6 (345-378)||(28704098-28704131)
chr6 (342-378)||(26907354-26907390)
[»] chr1 (1 HSPs)
chr1 (322-378)||(2871786-2871843)
[»] chr8 (1 HSPs)
chr8 (113-168)||(41821342-41821397)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 27141890 - 27141955
Alignment:
Q  206 tattcttaatttaaagcctaagtatggtggtttaattgttgtctcagagtttatgaataatatgga 271  Q
    |||| |||||||||||||||| ||||||||||| |||||||| ||| ||| |||||||||||||||    
T  27141890 tatttttaatttaaagcctaaatatggtggttttattgttgtttcacagtatatgaataatatgga 27141955  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 28704131 - 28704098
Alignment:
Q  345 atgaagtgattgagttgttttctcaatgggatca 378  Q
    ||||||||||||||||||||||||||||||||||    
T  28704131 atgaagtgattgagttgttttctcaatgggatca 28704098  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 26907390 - 26907354
Alignment:
Q  342 aagatgaagtgattgagttgttttctcaatgggatca 378  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26907390 aagatgaagtgattgaggtgttttctcaatgggatca 26907354  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 2871843 - 2871786
Alignment:
Q  322 ttagacaattaa-aatttactaagatgaagtgattgagttgttttctcaatgggatca 378  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  2871843 ttagacagttaacaatttactaagatgaagtgattgagttgttttctcaattggatca 2871786  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 41821397 - 41821342
Alignment:
Q  113 acccttgttgtctacaagaatagctgctcttatatcattattgaacatgaaaaaag 168  Q
    ||||||||||||| ||||||||||||||||| |||||||| | |||| ||||||||    
T  41821397 acccttgttgtctgcaagaatagctgctcttctatcattagtaaacaggaaaaaag 41821342  T

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