View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_high_9 (Length: 362)
Name: NF10078_high_9
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 48398238 - 48398525
Alignment:
| Q |
1 |
tagagtacaagcgagaaaggcgtgttgtatttcggaaagcctaacttgtctgttttcctacccattaggtatcatgtagaagaatgctgagtttcattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48398238 |
tagagtacaagcgagaaaggcgtgttgtatttcggaaagcctaacttgtctgttttcccacccattaggtatcatgtagaagaatgctgagtttcattta |
48398337 |
T |
|
| Q |
101 |
agggcagtcgattgtgttcttcgagttattttaaggtttaannnnnnncctttgtaaggttcgatgttagccttttgcttttataatatgcaagaactgt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48398338 |
agggcagtcgattgggttcttcgagttattttaaggtttagtttttttcctttgtagggttcgatgttagctttttgcttttataatatgcaagaactgt |
48398437 |
T |
|
| Q |
201 |
gtatatcaaccatgtactccaaaaccatggnnnnnnntctaatgtcaatcttattgtggggtaaagtcttaagttatatcagcttcaa |
288 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
48398438 |
gtatatcaaccatgtactccaaaaccatggaaaaaaatctaatgtcaatcttattgtggggtaaaatctgatgttatatcagcttcaa |
48398525 |
T |
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