View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_13 (Length: 337)
Name: NF10078_low_13
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 59 - 327
Target Start/End: Complemental strand, 48586716 - 48586447
Alignment:
| Q |
59 |
aattaggtggttagacttagagctgaaagttacaaccattttgcttgtttgttttactgattatgaagaaaatatttaaataattgaatgattatcaaat |
158 |
Q |
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| T |
48586716 |
aattaggtggttagacttagagctgaaaattacaaccattttgcttgtttgttttactgattatgaagaaaatatttaaataattgaatgattatcaaat |
48586617 |
T |
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| Q |
159 |
gtatatattgaaatgcta-ttagcagcaccacacttaatattgaaggtgtgtcctgtgtccgacacgtgtttgtgtcgacaccgacatatgttgttactt |
257 |
Q |
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| T |
48586616 |
gtatataatgaaatgctatttagcagcaccacacttaatattgaaggtgtgtcctgtgtccgacacgtgtttgtgtcgacaccgacatatgttgttactt |
48586517 |
T |
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| Q |
258 |
tcaattannnnnnnnnnnnnaactactactggtgtcgatgtatcagtcgtgttctatatgtgtgtctgtg |
327 |
Q |
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| T |
48586516 |
tcaattatttttatttttttaattactactggtgtcgatgtatcagtcgtgttctatatgtgtgtctgtg |
48586447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 48586839 - 48586798
Alignment:
| Q |
18 |
gctattagtttctgtttatcttaattaaactgctcctgtcaa |
59 |
Q |
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| T |
48586839 |
gctattagtttctgtttatcttaattaaactgctcctgtcaa |
48586798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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