View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_14 (Length: 329)
Name: NF10078_low_14
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 36049415 - 36049733
Alignment:
| Q |
1 |
ttcctaatagttttccagtagcaaaatnnnnnnngaattgcttgaaaagttgtttatgtgttattgcttgattttaaaaaataatacagagaggagggtg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36049415 |
ttcctaatagttttccagtagcaaaataaaaaaagaattgcttgaaaagttgtttatgtgttattgcttgattttaaaaaataatacagagaggagggtg |
36049514 |
T |
|
| Q |
101 |
tttgaggtgtgcgaaaacttggctttagaattttaatttgcgggtttcatgctatcacattttgaatgaagaaaaattcttcagtgaaggtgcttttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36049515 |
tttgaggtgtgcgaaaacttggctttagaattttaatttgcgggtttcatggtatcacattttgaatgaagaaaaattcttcagtgaaggtgcttttgga |
36049614 |
T |
|
| Q |
201 |
tcaattttaacacaaaatcagcttgttggttaaggtttacagaataatcttaagtccaaattaatatccagttgttgattgctttgcattttggaatttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36049615 |
tcaattttaacacaaaatcagcttgttggttaaggtttacagaataatcttaagtccaaattaatgtccagttgttgattgctttgcattttggaatttg |
36049714 |
T |
|
| Q |
301 |
tcgaatttcaacgtctctg |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
36049715 |
tcgaatttcaacgtctctg |
36049733 |
T |
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