View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10078_low_16 (Length: 307)
Name: NF10078_low_16
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 7085186 - 7085487
Alignment:
| Q |
7 |
aataattcactatgatata-aaatacaatcacaagcttcccttaattagtataaattacgggtataaaacgtgtaactatagtatttagaatgaaaaagg |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7085186 |
aataattcactatgatatacaaatacaatcacaagcttcccttaattagtataaattacgggtataaaacgtgtaactatagtatttagaatgaaaaagg |
7085285 |
T |
|
| Q |
106 |
aaagatgcactacaagatctaaatgataggaaaagggaatgctaaatttgaaggcaatgatgaaaatttgtgagttcagaatgaaataaaattttgtagt |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7085286 |
aaagatgcagtacaagatctaaatgataggaaaagggaatgctaaatttgaaggcaatgatgaaaatttgtgagttcagaatgaaataaaattttgcagt |
7085385 |
T |
|
| Q |
206 |
ttcaagaggtaaaaatgatgtgaaagcaatgcgtcatggatactagtaaatcttatgcttgtggctggcagccactctttgaaatgcatgcgcacaacac |
305 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7085386 |
tttaagaggtaaaaatgatgtgaaagtaatgcgtcatggatactagtaaatcttatgcttgtggctggcagccactctttgaaatgcatgcgcactacac |
7085485 |
T |
|
| Q |
306 |
ca |
307 |
Q |
| |
|
|| |
|
|
| T |
7085486 |
ca |
7085487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 49016795 - 49016759
Alignment:
| Q |
155 |
gaaggcaatgatgaaaatttgtgagttcagaatgaaa |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49016795 |
gaaggcaatgatgaaaaattgtgagttcagaatgaaa |
49016759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University