View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_18 (Length: 257)
Name: NF10078_low_18
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37419795 - 37420032
Alignment:
| Q |
1 |
ttgaagcatggatcttaatttcagcatgtgacaaatcagatcgcgaataacgattaccacggatcatagtaaccacttcaagtagaggcgcttctaaagt |
100 |
Q |
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| T |
37419795 |
ttgaagcatggatcttaatttcagcatgtgacaaatcagatcgcgaataacgattaccacgggtcatagtaaccacttcaagtagaggcgcttctaaagt |
37419894 |
T |
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| Q |
101 |
gacacactttacacctgaccaagtgcaagcatttgtcacatactctctaagaactgggaaattaagtgttaactcttttgactcgttagaagagtaacaa |
200 |
Q |
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| T |
37419895 |
gacacactttacacctgaccaagtgcaagcatttgtcacatactctctaagaattgggaaattaagtcgtaactcttttgactcattagaagagtaacaa |
37419994 |
T |
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| Q |
201 |
gtaattgtcattccagtcctgattgcaatgaaatgcaa |
238 |
Q |
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| T |
37419995 |
gtaattgtcattccagtcctgattgcaatcaaatgcaa |
37420032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 51944164 - 51944309
Alignment:
| Q |
71 |
aaccacttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagcatttgtcacatactctct-aagaactgggaaattaagtgt |
169 |
Q |
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| T |
51944164 |
aaccacttcaagtaaaggcgcttccaaagtgacactctttacaccagtccaagtgcaatcggctgcgtaatactctcttaagaattgggaaattaagagt |
51944263 |
T |
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| Q |
170 |
taactcttttgactcgttagaagagtaacaagtaattgtcattcca |
215 |
Q |
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| T |
51944264 |
taactcttttgattcattagaagactaacaagtaaatgtgattcca |
51944309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 34746958 - 34747077
Alignment:
| Q |
75 |
acttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagcatttgtcacatactctctaagaactgggaaattaagtgttaact |
174 |
Q |
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|||||||| ||||| ||| |||| |||||| ||| ||||||||| || ||||| || ||||||| ||| |||||||||||||||||||||||| ||| |
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| T |
34746958 |
acttcaagcagaggtacttgtaaaatgacactcttcacacctgacaaaatgcaaccaaatgtcacaaactttctaagaactgggaaattaagtgtcaacg |
34747057 |
T |
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| Q |
175 |
cttttgactcgttagaagag |
194 |
Q |
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| T |
34747058 |
ttttggagtcattagaagag |
34747077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 34742387 - 34742529
Alignment:
| Q |
71 |
aaccacttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagcatttgtcacatactctctaagaactgggaaattaagtgtt |
170 |
Q |
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| T |
34742387 |
aaccacttaaagtagaggcactcttaaagtaacactattcacacctgaccaagtgcaatccaatgtctcatactttctaattgctgggaaattaagtgcc |
34742486 |
T |
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| Q |
171 |
aactcttttgactcgttagaagagtaacaagtaattgtcattc |
213 |
Q |
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| T |
34742487 |
aaagttttggacttattagaagagtcacaagtaattgtgattc |
34742529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 34751627 - 34751706
Alignment:
| Q |
134 |
tgtcacatactctctaagaactgggaaattaagtgttaactcttttgactcgttagaagagtaacaagtaattgtcattc |
213 |
Q |
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| T |
34751627 |
tgtctcatactttctaagagctgggaaattaagcgccaacgttttggactcattagaagagtcacaagtaattgtgattc |
34751706 |
T |
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