View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_19 (Length: 256)
Name: NF10078_low_19
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 33859634 - 33859865
Alignment:
| Q |
44 |
tatgttgtttgttgtctttgaaaggccttgttcacagtttttcagttacgtgattttatcatcaccacctgcactgtgtctagtaagagcatatatgaat |
143 |
Q |
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| T |
33859634 |
tatgttgtttgttgtctttgaaaggccttgttcacagtttttcagttacgtgattttatcatcaccacctgcactgtgtctggtaagagcatatatgaat |
33859733 |
T |
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| Q |
144 |
agcttgtatttactttttgtt-------------------ttaaatataatcattagattagatgctatcatgtcactttatgtgtattttctcgtattg |
224 |
Q |
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| T |
33859734 |
agcttgtatttactttttgttttgggtgaaatgccattgcttaattataatcattagattagatgctatcatgtcactttatgtgtattttctcgtattg |
33859833 |
T |
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| Q |
225 |
aacttcatttatagtaaaatcaaaatccaact |
256 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33859834 |
aacttcatttatagtaaaatcaaaatccaact |
33859865 |
T |
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