View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10078_low_20 (Length: 254)

Name: NF10078_low_20
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10078_low_20
NF10078_low_20
[»] chr6 (24 HSPs)
chr6 (144-241)||(2156480-2156582)
chr6 (6-70)||(16825615-16825679)
chr6 (6-69)||(16816860-16816923)
chr6 (6-68)||(8275504-8275566)
chr6 (6-68)||(27509373-27509435)
chr6 (6-68)||(30437360-30437422)
chr6 (6-69)||(24143569-24143632)
chr6 (6-69)||(27517309-27517372)
chr6 (6-68)||(18965536-18965598)
chr6 (6-68)||(24150059-24150121)
chr6 (92-131)||(2156642-2156681)
chr6 (25-71)||(19169103-19169149)
chr6 (30-70)||(623847-623887)
chr6 (30-69)||(615946-615985)
chr6 (30-70)||(20048767-20048807)
chr6 (30-69)||(9131732-9131771)
chr6 (30-69)||(20040961-20041000)
chr6 (30-68)||(9145556-9145594)
chr6 (30-68)||(18436710-18436748)
chr6 (29-70)||(18961023-18961064)
chr6 (32-69)||(20051004-20051041)
chr6 (32-73)||(20058867-20058908)
chr6 (29-69)||(12391056-12391096)
chr6 (29-69)||(19719835-19719875)
[»] chr3 (28 HSPs)
chr3 (6-70)||(5651827-5651891)
chr3 (6-69)||(8812602-8812665)
chr3 (6-69)||(15529045-15529108)
chr3 (6-68)||(8804203-8804265)
chr3 (6-68)||(15537735-15537797)
chr3 (6-68)||(21607452-21607514)
chr3 (6-69)||(21616079-21616142)
chr3 (6-69)||(46385298-46385361)
chr3 (6-68)||(46371172-46371234)
chr3 (6-69)||(6201566-6201629)
chr3 (13-68)||(11629993-11630048)
chr3 (6-68)||(6193984-6194046)
chr3 (6-68)||(52501334-52501396)
chr3 (7-68)||(33814572-33814633)
chr3 (30-69)||(37256122-37256161)
chr3 (30-68)||(20604017-20604055)
chr3 (30-68)||(37265958-37265996)
chr3 (30-69)||(8623684-8623723)
chr3 (30-69)||(46393391-46393430)
chr3 (27-69)||(5945984-5946026)
chr3 (32-70)||(13509443-13509481)
chr3 (30-68)||(18706267-18706305)
chr3 (30-68)||(46401139-46401177)
chr3 (27-68)||(5960096-5960137)
chr3 (29-69)||(4313621-4313661)
chr3 (33-69)||(8612621-8612657)
chr3 (29-73)||(13086549-13086593)
chr3 (32-68)||(15610518-15610554)
[»] chr1 (12 HSPs)
chr1 (6-70)||(22570897-22570961)
chr1 (6-68)||(25926782-25926844)
chr1 (6-69)||(5624205-5624268)
chr1 (6-68)||(5638344-5638406)
chr1 (13-68)||(20979981-20980036)
chr1 (25-68)||(22840171-22840214)
chr1 (30-68)||(20429353-20429391)
chr1 (35-68)||(20518281-20518314)
chr1 (29-69)||(1961637-1961677)
chr1 (29-69)||(2336083-2336123)
chr1 (32-68)||(13450035-13450071)
chr1 (29-69)||(19367474-19367514)
[»] chr7 (18 HSPs)
chr7 (6-69)||(30365017-30365080)
chr7 (6-68)||(6113642-6113704)
chr7 (6-68)||(30379081-30379143)
chr7 (6-68)||(5651530-5651592)
chr7 (6-71)||(4847167-4847232)
chr7 (6-69)||(42631262-42631325)
chr7 (6-69)||(9474234-9474297)
chr7 (6-69)||(16388538-16388601)
chr7 (6-68)||(9460445-9460507)
chr7 (6-68)||(16402649-16402711)
chr7 (30-69)||(23878722-23878761)
chr7 (31-69)||(8817878-8817916)
chr7 (31-68)||(8810065-8810102)
chr7 (25-69)||(15683151-15683195)
chr7 (37-70)||(7343972-7344005)
chr7 (37-69)||(12583627-12583659)
chr7 (29-69)||(34132848-34132888)
chr7 (25-69)||(34363163-34363207)
[»] scaffold1634 (1 HSPs)
scaffold1634 (6-68)||(997-1059)
[»] scaffold0064 (1 HSPs)
scaffold0064 (6-68)||(9186-9248)
[»] chr8 (8 HSPs)
chr8 (6-68)||(18433030-18433092)
chr8 (6-68)||(23267930-23267992)
chr8 (6-68)||(15707138-15707200)
chr8 (6-69)||(39631527-39631590)
chr8 (6-68)||(39641075-39641137)
chr8 (30-69)||(12307699-12307738)
chr8 (29-68)||(32025680-32025719)
chr8 (32-68)||(24487945-24487981)
[»] chr2 (13 HSPs)
chr2 (6-68)||(39649666-39649728)
chr2 (6-69)||(12374553-12374616)
chr2 (6-69)||(12388380-12388443)
chr2 (6-68)||(44299959-44300020)
chr2 (6-70)||(22940183-22940247)
chr2 (6-69)||(22954079-22954142)
chr2 (6-68)||(22934222-22934284)
chr2 (29-68)||(11873682-11873721)
chr2 (25-68)||(45498997-45499040)
chr2 (30-68)||(12370481-12370519)
chr2 (30-68)||(22518990-22519028)
chr2 (29-69)||(5871137-5871177)
chr2 (25-69)||(45489352-45489396)
[»] chr5 (32 HSPs)
chr5 (6-69)||(7794287-7794350)
chr5 (6-69)||(15779747-15779810)
chr5 (6-69)||(17961873-17961936)
chr5 (6-69)||(31525329-31525392)
chr5 (6-68)||(7786438-7786500)
chr5 (6-68)||(15793982-15794044)
chr5 (6-68)||(17947984-17948046)
chr5 (6-68)||(31511206-31511268)
chr5 (6-68)||(34314250-34314312)
chr5 (6-69)||(12387255-12387318)
chr5 (6-69)||(21696071-21696134)
chr5 (6-69)||(36371292-36371355)
chr5 (6-69)||(36385220-36385283)
chr5 (6-69)||(36995955-36996018)
chr5 (6-69)||(37009893-37009956)
chr5 (6-68)||(21688153-21688215)
chr5 (6-72)||(26553269-26553335)
chr5 (6-69)||(5435728-5435791)
chr5 (6-69)||(5449548-5449611)
chr5 (6-68)||(12395948-12396010)
chr5 (6-68)||(25450613-25450675)
chr5 (30-69)||(11939641-11939680)
chr5 (30-69)||(1805239-1805278)
chr5 (30-69)||(7255096-7255135)
chr5 (30-69)||(7262538-7262577)
chr5 (30-69)||(37048343-37048382)
chr5 (30-68)||(1797499-1797537)
chr5 (31-69)||(29901228-29901266)
chr5 (29-69)||(20092779-20092819)
chr5 (29-69)||(20639889-20639929)
chr5 (25-69)||(23577462-23577506)
chr5 (29-69)||(25526187-25526227)
[»] chr4 (16 HSPs)
chr4 (6-69)||(20842674-20842737)
chr4 (6-69)||(22712424-22712487)
chr4 (6-68)||(18389062-18389124)
chr4 (6-68)||(22703454-22703516)
chr4 (6-68)||(41148979-41149041)
chr4 (6-70)||(13100668-13100732)
chr4 (6-68)||(12427136-12427198)
chr4 (14-68)||(3836814-3836868)
chr4 (32-68)||(15580511-15580547)
chr4 (25-69)||(15880067-15880111)
chr4 (25-69)||(16720798-16720842)
chr4 (25-68)||(16728821-16728864)
chr4 (30-69)||(39534174-39534213)
chr4 (30-68)||(55793256-55793294)
chr4 (29-69)||(3382471-3382511)
chr4 (37-69)||(55788786-55788818)
[»] scaffold0029 (3 HSPs)
scaffold0029 (6-68)||(20212-20274)
scaffold0029 (7-69)||(33952-34014)
scaffold0029 (30-70)||(38100-38140)
[»] scaffold1719 (1 HSPs)
scaffold1719 (13-70)||(1-58)
[»] scaffold0755 (1 HSPs)
scaffold0755 (6-69)||(962-1025)
[»] scaffold0068 (2 HSPs)
scaffold0068 (6-69)||(17776-17839)
scaffold0068 (6-68)||(25695-25757)
[»] scaffold0011 (2 HSPs)
scaffold0011 (6-69)||(202678-202741)
scaffold0011 (6-69)||(208755-208818)
[»] scaffold0431 (1 HSPs)
scaffold0431 (6-68)||(2777-2839)
[»] scaffold0182 (1 HSPs)
scaffold0182 (6-68)||(1715-1777)
[»] scaffold0098 (1 HSPs)
scaffold0098 (6-68)||(52989-53051)
[»] scaffold0050 (1 HSPs)
scaffold0050 (25-68)||(41287-41330)
[»] scaffold0027 (1 HSPs)
scaffold0027 (30-68)||(417-455)
[»] scaffold0378 (3 HSPs)
scaffold0378 (25-69)||(769-813)
scaffold0378 (30-68)||(3336-3374)
scaffold0378 (30-68)||(15816-15854)
[»] scaffold0605 (1 HSPs)
scaffold0605 (30-69)||(9365-9404)
[»] scaffold0243 (1 HSPs)
scaffold0243 (30-69)||(20791-20830)
[»] scaffold0101 (1 HSPs)
scaffold0101 (25-68)||(16560-16603)
[»] scaffold0094 (1 HSPs)
scaffold0094 (30-69)||(30727-30766)
[»] scaffold0032 (1 HSPs)
scaffold0032 (25-70)||(29135-29180)
[»] scaffold0503 (2 HSPs)
scaffold0503 (25-69)||(1939-1983)
scaffold0503 (25-69)||(6506-6550)
[»] scaffold0441 (1 HSPs)
scaffold0441 (32-68)||(2471-2507)
[»] scaffold0005 (1 HSPs)
scaffold0005 (37-69)||(304484-304516)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 2156582 - 2156480
Alignment:
Q  144 aaccactcactttgttgccccctttctgcatcttttctcgcacacgattcttaacata-----ttatttgaatctgagctttccaattcttcctatttga 238  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  2156582 aaccactcactttgtcgccccctttctgcatcttttcttgcacacgattcttaacatattttcttatttgaatctgagctttccaattcttcctatttga 2156483  T
Q  239 tct 241  Q
    |||    
T  2156482 tct 2156480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 16825615 - 16825679
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16825615 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacagt 16825679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 16816860 - 16816923
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16816860 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 16816923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 8275566 - 8275504
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8275566 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 8275504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 27509435 - 27509373
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  27509435 agtctgatccgagttcggagacgagtgtcagtgggaccttaggtcaaaatttggggtatgaca 27509373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 30437360 - 30437422
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  30437360 agtctgatccgagttcggagacgtgtgtcggtgggaccttaggtcaaaatttggggtatgaca 30437422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 24143569 - 24143632
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  24143569 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgacag 24143632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 27517372 - 27517309
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  27517372 agtctgatccgagtttggagacgagtgtcagtgggaccttaggtcaaaatttggggtatgacag 27517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 18965536 - 18965598
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  18965536 agtctggtccgagttcggaaacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 18965598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 24150059 - 24150121
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24150059 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgaca 24150121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 2156681 - 2156642
Alignment:
Q  92 cttccttgaaacgtttttctcttcaatcttgctccgtgca 131  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2156681 cttccttgaaacgtttttctcttcaatcttgctccgtgca 2156642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 19169149 - 19169103
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagta 71  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  19169149 gacgtgtgtcagtgggaccttaggtcaaaaattggggtatgacagta 19169103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 623847 - 623887
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  623847 gtgtcagtgggatcttgggtcaaaatttggggtatgacagt 623887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 615946 - 615985
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  615946 gtgtcagtgggatcttgggtcaaaatttggggtatgacag 615985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 20048767 - 20048807
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  20048767 gtgtcagtgggatcttgggtcaaaaattggggtatgacagt 20048807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 9131732 - 9131771
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  9131732 gtgtcaatgggatcttgggtcaaaatttggggtatgacag 9131771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 20040961 - 20041000
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  20040961 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 20041000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 9145556 - 9145594
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  9145556 gtgtcaatgggatcttgggtcaaaatttggggtatgaca 9145594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 18436748 - 18436710
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  18436748 gtgttagtgggatcttaggtcaaaaattggggtatgaca 18436710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 18961023 - 18961064
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    ||||||||||||  |||||||||||| |||||||||||||||    
T  18961023 tgtgtcagtggggccttaggtcaaaaattggggtatgacagt 18961064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 20051004 - 20051041
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  20051004 gtcagtgggaacttaggtcaaaaattggggtatgacag 20051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 20058867 - 20058908
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgacagtact 73  Q
    |||||||||| |||||||||||| ||||||||||||| ||||    
T  20058867 gtcagtgggaccttaggtcaaaaattggggtatgacaatact 20058908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 12391096 - 12391056
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||| ||||| |||||||||||||| ||||||||||||||    
T  12391096 tgtgttagtggtatcttaggtcaaaaattggggtatgacag 12391056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 19719875 - 19719835
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  19719875 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 19719835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 5651827 - 5651891
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5651827 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacagt 5651891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 8812665 - 8812602
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8812665 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 8812602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 15529045 - 15529108
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15529045 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 15529108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 8804265 - 8804203
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8804265 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 8804203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 15537735 - 15537797
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15537735 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 15537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 21607514 - 21607452
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21607514 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 21607452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 21616142 - 21616079
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  21616142 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtataacag 21616079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 46385361 - 46385298
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46385361 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 46385298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 46371234 - 46371172
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46371234 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 46371172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 6201629 - 6201566
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  6201629 agtctggtccgagttcggagacgtgtgtcagtgtgaccttaggtcaaaatttggggtatgacag 6201566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 11629993 - 11630048
Alignment:
Q  13 tccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11629993 tccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 11630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 6194046 - 6193984
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  6194046 agtctggtccgagttcggagacgtgtgtcagtgtgaccttaggtcaaaatttggggtatgaca 6193984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 52501396 - 52501334
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||    
T  52501396 agtctgatccgagttcggagacgtgtgtcggtaggaccttaggtcaaaatttggggtatgaca 52501334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 33814572 - 33814633
Alignment:
Q  7 gtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  33814572 gtctggtccgagttcggagacgtgtatcagtgggaccttaggtcaaaaattggggtatgaca 33814633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 37256122 - 37256161
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  37256122 gtgtcagtgggatcttgggtcaaaatttggggtatgacag 37256161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 20604017 - 20604055
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  20604017 gtgtcagtgggatcttgggtcaaaatttggggtatgaca 20604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 37265958 - 37265996
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  37265958 gtgtcagtgggatcttgggtcaaaatttggggtatgaca 37265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 8623723 - 8623684
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  8623723 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 8623684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 46393391 - 46393430
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  46393391 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 46393430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 5945984 - 5946026
Alignment:
Q  27 cgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||| |||||| |||||||| ||||||||||||||    
T  5945984 cgtgtgtcagtgagatcttgggtcaaaaattggggtatgacag 5946026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 13509443 - 13509481
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  13509443 gtcagtgggaccttaggtcaaaatttagggtatgacagt 13509481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 18706305 - 18706267
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  18706305 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 18706267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 46401139 - 46401177
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  46401139 gtgtcagtgggatcttgggtcaaaaattggggtatgaca 46401177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 5960096 - 5960137
Alignment:
Q  27 cgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||| |||||||| |||||||||||||    
T  5960096 cgtgtgtcagtgagatcttgggtcaaaaattggggtatgaca 5960137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 4313621 - 4313661
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  4313621 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 4313661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 8612657 - 8612621
Alignment:
Q  33 tcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  8612657 tcagtgggctcttaggtcaaaaattggggtatgacag 8612621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 13086593 - 13086549
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacagtact 73  Q
    ||||| ||||||| |||||||||||| ||||||||||||| ||||    
T  13086593 tgtgttagtgggaccttaggtcaaaaattggggtatgacactact 13086549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 15610518 - 15610554
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||| |||||||||||| |||||||||||||    
T  15610518 gtcagtgggaccttaggtcaaaaattggggtatgaca 15610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 22570897 - 22570961
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22570897 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacagt 22570961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 25926782 - 25926844
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25926782 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 25926844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 5624205 - 5624268
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5624205 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 5624268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 5638344 - 5638406
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5638344 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 5638406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 20979981 - 20980036
Alignment:
Q  13 tccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20979981 tccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 20980036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 22840171 - 22840214
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||| |||||||||||| |||||||||||| |||||||||||||    
T  22840171 gacgcgtgtcagtgggaccttaggtcaaaaattggggtatgaca 22840214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 20429391 - 20429353
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  20429391 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 20429353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 20518314 - 20518281
Alignment:
Q  35 agtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||| |||||||||||||    
T  20518314 agtgggatcttaggtcaaaaattggggtatgaca 20518281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 1961677 - 1961637
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  1961677 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 1961637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 2336083 - 2336123
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  2336083 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 2336123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 13450071 - 13450035
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  13450071 gtcagtgggaccttaggtcaaaatttagggtatgaca 13450035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 19367514 - 19367474
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  19367514 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 19367474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 30365017 - 30365080
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30365017 agtctggtccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 30365080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 6113704 - 6113642
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6113704 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 6113642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 30379081 - 30379143
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30379081 agtctggtccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 30379143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 5651530 - 5651592
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5651530 agtctggtccgagttcgaagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 5651592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 4847232 - 4847167
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagta 71  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4847232 agtctggtccgagtccggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacagta 4847167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 42631262 - 42631325
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  42631262 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgacag 42631325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 9474297 - 9474234
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  9474297 agtctggtccgagttcggagacgtgtgtcagtggagccttaggtcaaaatttggggtatgacag 9474234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 16388538 - 16388601
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  16388538 agtctggtccgagttcggggacgtgtgttagtgggaccttaggtcaaaatttggggtatgacag 16388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 9460507 - 9460445
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  9460507 agtctggtccgagttcggagacgtgtgtcagtggagccttaggtcaaaatttggggtatgaca 9460445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 16402649 - 16402711
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  16402649 agtctggtccgagttcggggacgtgtgttagtgggaccttaggtcaaaatttggggtatgaca 16402711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 23878722 - 23878761
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  23878722 gtgtcagtgggatcttgggtcaaaatttggggtatgacag 23878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 8817916 - 8817878
Alignment:
Q  31 tgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  8817916 tgtcagtgggatcttgggtcaaaatttggggtatgacag 8817878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 8810102 - 8810065
Alignment:
Q  31 tgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8810102 tgtcagtgggatcttgggtcaaaatttggggtatgaca 8810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 15683195 - 15683151
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  15683195 gacgcgtgtcagtgggaccttaggtcaaaaattggggtatgacag 15683151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 7343972 - 7344005
Alignment:
Q  37 tgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||||||||| |||||||||||||||    
T  7343972 tgggatcttaggtcaaaaattggggtatgacagt 7344005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 12583659 - 12583627
Alignment:
Q  37 tgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||| ||||||||||||||    
T  12583659 tgggatcttaggtcaaaaattggggtatgacag 12583627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 34132848 - 34132888
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  34132848 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 34132888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 34363163 - 34363207
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| ||||||||||| |||| |||||||| ||||||||||||||    
T  34363163 gacgcgtgtcagtggggtcttgggtcaaaaattggggtatgacag 34363207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1634 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 1059 - 997
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1059 agtctggtccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 9186 - 9248
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9186 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 9248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 18433092 - 18433030
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18433092 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 18433030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 23267930 - 23267992
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23267930 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 23267992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 15707200 - 15707138
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15707200 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 15707138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 39631527 - 39631590
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  39631527 agtctggtccgagttcggagacgtgtgtcagtgagaccttaggtcaaaatttggggtatgacag 39631590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 39641075 - 39641137
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  39641075 agtctggtccgagttcggagacgtgtgtcagtgagaccttaggtcaaaatttggggtatgaca 39641137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 12307699 - 12307738
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  12307699 gtgtcagtgggatcttgggtcaaaatttggggtatgacag 12307738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 32025680 - 32025719
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  32025680 tgtgtcagtggggtcttaggtcaaaaattggggtatgaca 32025719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 24487945 - 24487981
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||| |||||||||||| |||||||||||||    
T  24487945 gtcagtgggaccttaggtcaaaaattggggtatgaca 24487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 39649728 - 39649666
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39649728 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 39649666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 12374616 - 12374553
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12374616 agtctggtccgagttcggagacgtgtgtcagtggaaccttaggtcaaaatttggggtatgacag 12374553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 12388443 - 12388380
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12388443 agtctggtccgagttcggagacgtgtgtcagtggaaccttaggtcaaaatttggggtatgacag 12388380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 44300020 - 44299959
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  44300020 agtctggtccgagttcggagac-tgtgtcagtgggaccttaggtcaaaatttggggtatgaca 44299959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 22940247 - 22940183
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||| | |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  22940247 agtctggttcgagttcgaagacgtgtgtcagtgggacctttggtcaaaatttggggtatgacagt 22940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 22954142 - 22954079
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| | |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||    
T  22954142 agtctggttcgagttcgaagacgtgtgtcagtgggacctttggtcaaaatttggggtatgacag 22954079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 22934284 - 22934222
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| | |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||    
T  22934284 agtctggttcgagttcgaagacgtgtgtcagtgggacctttggtcaaaatttggggtatgaca 22934222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 11873721 - 11873682
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  11873721 tgtgtcagtggggtcttaggtcaaaaattggggtatgaca 11873682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 45498997 - 45499040
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||    
T  45498997 gacgtgtgtcagtggggtcttaggtcaaaaattggagtatgaca 45499040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 12370481 - 12370519
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  12370481 gtgtcagtgggatcttgggtcaaaaattggggtatgaca 12370519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 22518990 - 22519028
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  22518990 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 22519028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 5871137 - 5871177
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  5871137 tgtgtcagtgggcccttaggtcaaaaattggggtatgacag 5871177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 45489352 - 45489396
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||| ||| || |||||||||||| ||||||||||||||    
T  45489352 gacgtgtgtcggtgtgaccttaggtcaaaaattggggtatgacag 45489396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 7794350 - 7794287
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  7794350 agtctgatccgagttcggagacgcgtgtcagtgggaccttaggtcaaaatttggggtatgacag 7794287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 15779747 - 15779810
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15779747 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 15779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 17961936 - 17961873
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17961936 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 17961873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 31525392 - 31525329
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31525392 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 31525329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 7786500 - 7786438
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  7786500 agtctgatccgagttcggagacgcgtgtcagtgggaccttaggtcaaaatttggggtatgaca 7786438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 15793982 - 15794044
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15793982 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 15794044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 17948046 - 17947984
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17948046 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 17947984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 31511268 - 31511206
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31511268 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 31511206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 34314250 - 34314312
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34314250 agtctgatccgagttcggagacgtgtgtcggtgggaccttaggtcaaaatttggggtatgaca 34314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 12387255 - 12387318
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  12387255 agtctggtccgagttcggggacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 12387318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 21696134 - 21696071
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  21696134 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgacag 21696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 36371292 - 36371355
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36371292 agtctggtccgagttcggagacgtgtgttagtgggaccttaggtcaaaatttggggtatgacag 36371355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 36385220 - 36385283
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36385220 agtctggtccgagttcggagacgtgtgttagtgggaccttaggtcaaaatttggggtatgacag 36385283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 36995955 - 36996018
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36995955 agtctggtccgagttcggagacgtgtgttagtgggaccttaggtcaaaatttggggtatgacag 36996018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 37009893 - 37009956
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37009893 agtctggtccgagttcggagacgtgtgttagtgggaccttaggtcaaaatttggggtatgacag 37009956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 21688215 - 21688153
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  21688215 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgaca 21688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 26553269 - 26553335
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagtac 72  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26553269 agtctggtccgagttcggagaagtgtgtcagtgggaccttaggtcaaaaattggggtatgacagtac 26553335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 5435728 - 5435791
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||    
T  5435728 agtctggtccgagttcggagatgtgtgtcagtgggacctttggtcaaaatttggggtatgacag 5435791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 5449548 - 5449611
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||    
T  5449548 agtctggtccgagttcggagatgtgtgtcagtgggacctttggtcaaaatttggggtatgacag 5449611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 12395948 - 12396010
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  12395948 agtctggtccgagtttggggacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 12396010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 25450613 - 25450675
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25450613 agtctggtccgagttcagagacgtgtgtcagtgggacctttggtcaaaatttggggtatgaca 25450675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 11939641 - 11939680
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  11939641 gtgtcagtgggatcttgggtcaaaatttggggtatgacag 11939680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 1805278 - 1805239
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  1805278 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 1805239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 7255096 - 7255135
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  7255096 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 7255135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 7262538 - 7262577
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  7262538 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 7262577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 37048382 - 37048343
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  37048382 gtgtcagtgggatcttaggtcaaaaatttgggtatgacag 37048343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 1797537 - 1797499
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  1797537 gtgtcagtgggatcttgggtcaaaaattggggtatgaca 1797499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 29901266 - 29901228
Alignment:
Q  31 tgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  29901266 tgtcagtgggaccttaggtcaaaaattggggtatgacag 29901228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 20092779 - 20092819
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  20092779 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 20092819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 20639889 - 20639929
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  20639889 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 20639929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 23577462 - 23577506
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| |||||| ||||| |||||||||||| ||||||||||||||    
T  23577462 gacgcgtgtcaatgggaccttaggtcaaaaattggggtatgacag 23577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 25526227 - 25526187
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  25526227 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 25526187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 20842674 - 20842737
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  20842674 agtctgatccgagttcggagacgtgtgtcagtgggaccttaggtaaaaatttggggtatgacag 20842737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 22712487 - 22712424
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  22712487 agtctgatccgagttcggagacgtgtgtcggtgggaccttaggtcaaaatttggggtatgacag 22712424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 18389062 - 18389124
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  18389062 agtctgatccgagttcggagacgtgtgtcagtgggactttaggtcaaaatttggggtatgaca 18389124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 22703516 - 22703454
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  22703516 agtctgatccgagttcggagacgtgtgtcggtgggaccttaggtcaaaatttggggtatgaca 22703454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 41149041 - 41148979
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41149041 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 41148979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 13100732 - 13100668
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13100732 agtctgatctgagttcggagacgtgtgtcagtggggccttaggtcaaaatttggggtatgacagt 13100668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 12427198 - 12427136
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12427198 agtctggtccgagttcggggacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 12427136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 3836814 - 3836868
Alignment:
Q  14 ccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3836814 ccgagttcggagacgtgtgtcagtggaaccttaggtcaaaatttggggtatgaca 3836868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 15580511 - 15580547
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15580511 gtcagtgggatcttaggtcaaaaattggggtatgaca 15580547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 15880067 - 15880111
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  15880067 gacgcgtgtcagtgggaccttaggtcaaaaattggggtatgacag 15880111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 16720798 - 16720842
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||    
T  16720798 gacgtgtgtcagtcgggtcttaggtcaaaaattggggtatgacag 16720842  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 16728821 - 16728864
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| |||||||| |||| |||||||||||||    
T  16728821 gacgtgtgtcagtggggtcttaggtaaaaaattggggtatgaca 16728864  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 39534213 - 39534174
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  39534213 gtgtcagtgggatcttgggtcaaaaattggggtatgacag 39534174  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 55793256 - 55793294
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  55793256 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 55793294  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3382471 - 3382511
Alignment:
Q  29 tgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  3382471 tgtgtcagtggggccttaggtcaaaaattggggtatgacag 3382511  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 55788818 - 55788786
Alignment:
Q  37 tgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||| ||||||||||||||    
T  55788818 tgggatcttaggtcaaaaattggggtatgacag 55788786  T

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Target: scaffold0029 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 20274 - 20212
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20274 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 20212  T

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Target: scaffold0029; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 34014 - 33952
Alignment:
Q  7 gtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34014 gtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacag 33952  T

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Target: scaffold0029; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 38100 - 38140
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  38100 gtgtcagtggggccttaggtcaaaaattggggtatgacagt 38140  T

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Target: scaffold1719 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1719
Description:

Target: scaffold1719; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 1 - 58
Alignment:
Q  13 tccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1 tccgagttcggagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgacagt 58  T

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Target: scaffold0755 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 1025 - 962
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    ||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  1025 agtctgatctgagttcggagacgtgtgtcagtggggccttaggtcaaaatttggggtatgacag 962  T

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Target: scaffold0068 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 17776 - 17839
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  17776 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgacag 17839  T

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Target: scaffold0068; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 25695 - 25757
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  25695 agtctggtccgagttcggagacgtgtgtcagtgggaccttaggtcaaaaattggggtatgaca 25757  T

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Target: scaffold0011 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 202678 - 202741
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  202678 agtctggtccgagttcggagacgtgtgtcagtgggacctttggtcaaaatttggggtatgacag 202741  T

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Target: scaffold0011; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 208755 - 208818
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||| | |||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  208755 agtctggtacgagttcgaagaagtgtgtcagtgggacctttggtcaaaatttggggtatgacag 208818  T

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Target: scaffold0431 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 2777 - 2839
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  2777 agtctggtccgagttcggggacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 2839  T

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Target: scaffold0182 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 1777 - 1715
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1777 agtctggtccgagttcagagacgtgtgtcagtgggaccttaggtcaaaatttggggtatgaca 1715  T

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Target: scaffold0098 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 53051 - 52989
Alignment:
Q  6 agtctgatccgagttcggagacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  53051 agtctggtccgagttcggagacgcgtgtcagtgggatcttgggtcaaaaattggggtatgaca 52989  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 41287 - 41330
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  41287 gacgcgtgtcagtgggatcttaggtcaaaaattggggtatgaca 41330  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 417 - 455
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  417 gtgtcagtgggatcttgggtcaaaatttggggtatgaca 455  T

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Target: scaffold0378 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 813 - 769
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  813 gacgcgtgtcagtgggaccttaggtcaaaaattggggtatgacag 769  T

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Target: scaffold0378; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 3374 - 3336
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  3374 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 3336  T

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Target: scaffold0378; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 15854 - 15816
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  15854 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 15816  T

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Target: scaffold0605 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 9365 - 9404
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  9365 gtgtcagtgggaacttaggtcaaaaattggggtatgacag 9404  T

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Target: scaffold0243 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 20830 - 20791
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  20830 gtgtcagtgggatcttaggtaaaaaattggggtatgacag 20791  T

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Target: scaffold0101 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 16560 - 16603
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||| |||||||||||| |||||||||||| |||||||||||||    
T  16560 gacgcgtgtcagtgggaccttaggtcaaaaattggggtatgaca 16603  T

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Target: scaffold0094 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 30727 - 30766
Alignment:
Q  30 gtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  30727 gtgtcagtgggaccttaggtcaaaaattggggtatgacag 30766  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 29135 - 29180
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacagt 70  Q
    |||| |||||||||||| |||||||||||| |||| ||||||||||    
T  29135 gacgcgtgtcagtgggaccttaggtcaaaaattggagtatgacagt 29180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 1939 - 1983
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| ||||||||| || |||||||||||| ||||||||||||||    
T  1939 gacgcgtgtcagtgagaccttaggtcaaaaattggggtatgacag 1983  T

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Target: scaffold0503; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 6506 - 6550
Alignment:
Q  25 gacgtgtgtcagtgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||| ||||||||| || |||||||||||| ||||||||||||||    
T  6506 gacgcgtgtcagtgagaccttaggtcaaaaattggggtatgacag 6550  T

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Target: scaffold0441 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 2507 - 2471
Alignment:
Q  32 gtcagtgggatcttaggtcaaaatttggggtatgaca 68  Q
    |||||||||| |||||||||||| |||||||||||||    
T  2507 gtcagtgggaccttaggtcaaaaattggggtatgaca 2471  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 304516 - 304484
Alignment:
Q  37 tgggatcttaggtcaaaatttggggtatgacag 69  Q
    |||||||||||||||||| ||||||||||||||    
T  304516 tgggatcttaggtcaaaaattggggtatgacag 304484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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