View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_22 (Length: 251)
Name: NF10078_low_22
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 33860111 - 33859878
Alignment:
| Q |
15 |
gagtcagcattgatgaattgaatcgtgcaggatgatgatatggatgtatttgtggaaaaacaatatcagaagaggaagaagacctatgattctgctgttt |
114 |
Q |
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| T |
33860111 |
gagtcagcattgatgaatggaatcgtgcaggatgatgatatggatgtatttgtggaaaaacaacatcagaagaggaaga---cctttgattctgctgttt |
33860015 |
T |
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| Q |
115 |
agtattagttatgctgattagtataacagaaattttaaatttgaatttcagtattgctaggaacagattttacctattaagtaggattaattgttaggaa |
214 |
Q |
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| T |
33860014 |
aggattagttatgctgattagtataatagaatttttaaatttgaatttcagtattgctaggaacagattttacctattaagtaggattaattgttgggaa |
33859915 |
T |
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| Q |
215 |
gacctttgaatttctctctaggtgttctgtgtgatgt |
251 |
Q |
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| T |
33859914 |
gacctttgaatttctctctaggagttctgtgtgatgt |
33859878 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 32867656 - 32867597
Alignment:
| Q |
135 |
gtataacagaaattttaaatttgaatttcagtattgctaggaacagattttacctattaa |
194 |
Q |
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| T |
32867656 |
gtataacagaatttttaaacttaaattacagtattgttgagaacagattttacctattaa |
32867597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 32867753 - 32867697
Alignment:
| Q |
50 |
tgatatggatgtatttgtggaaaaacaatatcagaagaggaagaagacctatgattctg |
108 |
Q |
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| T |
32867753 |
tgatacggatgcatttgtgggaaaacaatatcagaagagg--gaagacctttgattctg |
32867697 |
T |
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