View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_24 (Length: 240)
Name: NF10078_low_24
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47933576 - 47933796
Alignment:
| Q |
1 |
cctcaagttcttgcataccatattgtttcaaattctttcacattcctaccctttgttccttacactgtatcatcaatagtgaaagccttgtatagagttt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
47933576 |
cctcaagttcttgcatacca-attgtttcaaattctttcacattcctaccctttgttcattacactgtatcatcaatagtgaaagccttacatagagttt |
47933674 |
T |
|
| Q |
101 |
tcagcactgttggcgaccttaactctttttcaccctaagactacactctagcactgatttagtgtgtttgtaaaatattttgaacggaaaagctcctctg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933675 |
tcagcactgttggcgaccttaactctttttcaccctaagactacactctagcactgatttagtgtgtttgtaaaatattttgaacggaaaagctcctctg |
47933774 |
T |
|
| Q |
201 |
ttacctttgtttatgggttctt |
222 |
Q |
| |
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|||||||||||||||| ||||| |
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|
| T |
47933775 |
ttacctttgtttatggtttctt |
47933796 |
T |
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