View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_25 (Length: 236)
Name: NF10078_low_25
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48398248 - 48398022
Alignment:
| Q |
1 |
cttgtactctacttcgtctctctggtgcatgattagaagggctcttcttacctgaaatgatattatatatgaatgaatacgacaataaaaatatatacat |
100 |
Q |
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| T |
48398248 |
cttgtactctacttcgtctctctggtgcatgattagaagggctcttcttacctgaaatgatattatatatgaatgaatatgacaataaaaatatatacat |
48398149 |
T |
|
| Q |
101 |
gtaagcttttggtgagaagattgataacgtgctcgagtataattcaagagaagnnnnnnnggaacacacaatggctttaagttgcaacagttttgaacag |
200 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
48398148 |
gtaagcttttggtgagaagattgataacatgcttgagtataattcaagagaagaaaaaaaggaacacacaatggctttaagttgcaacagttatgaacag |
48398049 |
T |
|
| Q |
201 |
tgttatggttcattcaatcccctttgc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48398048 |
tgttatggttcattcaatcccctttgc |
48398022 |
T |
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