View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10078_low_5 (Length: 474)
Name: NF10078_low_5
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 37419790 - 37419324
Alignment:
| Q |
1 |
tcagaaattccgttatgatggttatgtgtcagcagagaccattttactagatgcacacgttgcgaaggctgatatttctctaataacttcaaaggtcaag |
100 |
Q |
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| T |
37419790 |
tcagaaattccgttatgatggttatgtgtcagcagagaccattttactagatgcacatgttgcgaaggctgatatttctctaataacttcaaaggtcaag |
37419691 |
T |
|
| Q |
101 |
agtgtgcaacaaatgggggtttttgttcgcaagcttttcagtattattaatgtggaatgtttacggctttatctgtatcttaatccggtatgttttcttg |
200 |
Q |
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| T |
37419690 |
agcgtgcaacaaatggggatttttgttcgcaagcttttcagtattattaatgtggaatgtttacggctttatctgtatcttaatccggtatgttttcttg |
37419591 |
T |
|
| Q |
201 |
cttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcggga |
300 |
Q |
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| T |
37419590 |
cttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcggga |
37419491 |
T |
|
| Q |
301 |
gactttttaataattgttctctggtgattaaaatactttagcatattatatgattatgaagttttgaactttcactagtgaaaaattgtctaatggttca |
400 |
Q |
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| T |
37419490 |
gactttttaataattgttctctggtgattaaaatactttagcatattatatgattatgaagttttgaactttcactagtgataaattgtctaatggttca |
37419391 |
T |
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| Q |
401 |
tttcatttactctatctcttggataatttcataatcgttgttctaacatgacaggctccctatgctt |
467 |
Q |
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| T |
37419390 |
tttcatttactctatctcttggataatttcataatcgttgttctaacatgacaggctccctatgctt |
37419324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 161 - 339
Target Start/End: Complemental strand, 37428084 - 37427906
Alignment:
| Q |
161 |
ttacggctttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaata |
260 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37428084 |
ttacggctttatctgcatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaata |
37427985 |
T |
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| Q |
261 |
actaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgattaaaatacttt |
339 |
Q |
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| T |
37427984 |
actaaatttgtaattagtaagtaaaatacaaggctagggaaactttttaataattgttctctggtggttaaaacacttt |
37427906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 37427902 - 37427826
Alignment:
| Q |
376 |
tagtgaaaaattgtctaatggttcatttcatttactctatctcttggataatttcataat-cgttgttctaacatga |
451 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
37427902 |
tagtgaaaaattgtctaattgttcatttcatttactcaatctcttggataatttcttaatatgttgttctaacatga |
37427826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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