View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10078_low_6 (Length: 451)
Name: NF10078_low_6
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 37743988 - 37743568
Alignment:
| Q |
18 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37743988 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgatttttttcttacaactctgaatgaaatatgaaggtcatcatggtca |
37743889 |
T |
|
| Q |
118 |
acagttaaattaaaaatacttcgtccattcctttttcttgtcattttaagattatttacgcggtccatatttatgagtttgttttccctttttattttca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37743888 |
acagttaaattaaaaatacttcgtccattcctttttcttgtcattttaagattatttacgcggtccatatttatgagtttgctttccctttttattttca |
37743789 |
T |
|
| Q |
218 |
ttcagagtcacagttccatatagtatatgctagcatgtgatttcattaaatttgatgatgttcaatcatttggctataattctatttggaagtatataat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
37743788 |
ttcagagtcacagttccatatagtatatgctagcatgtgatttcattaaatttgatgatgttcaatcatttggttataattctatttggaagtatataat |
37743689 |
T |
|
| Q |
318 |
tcaactgcaataaaccaataactctctgatacttatggttagtatgctgtcaatgcatgcttttgctagtttttgttgaattccacttcttgtcctactt |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37743688 |
tcaactgcaataaaccaataactctctcatacttatggttagtatgctgtcaatgcatgcttttgctagtttttgttgaattccacttcttgtcctactt |
37743589 |
T |
|
| Q |
418 |
gaatactcaaatacataacct |
438 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
37743588 |
gaatagtcaaatacataacct |
37743568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 34694416 - 34694740
Alignment:
| Q |
18 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34694416 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgatttttttcttacaactctgaatgaaatatgaaggtcatcatggtca |
34694515 |
T |
|
| Q |
118 |
acagttaaattaaaaata----cttcgtccattcctttttcttgtcattttaagattatttacgcggtccatatttatgagtttgttttccctttttatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
34694516 |
acagttaaattaaaaatatatacttcgtccattcctttttcttgtcattttaagattatttacgcagtccatatttatgagtttgctttccctttttatt |
34694615 |
T |
|
| Q |
214 |
ttcattcagagtcacagttccatatagtatatgctagcatgtgatttcattaaatttgatgatgttcaatcatttggctataattctatttggaagtata |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34694616 |
ttcattcagagtcgcagttccatatagtatatgctagcatttgatttcattaaatttgatgatgttcaatcatttggttataattctatttggaagtata |
34694715 |
T |
|
| Q |
314 |
taattcaactgcaataaaccaataa |
338 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34694716 |
taattcaactgcaataaaccaataa |
34694740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 34716828 - 34717152
Alignment:
| Q |
18 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34716828 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgatttttttcttacaactctgaatgaaatatgaaggtcatcatggtca |
34716927 |
T |
|
| Q |
118 |
acagttaaattaaaaata----cttcgtccattcctttttcttgtcattttaagattatttacgcggtccatatttatgagtttgttttccctttttatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
34716928 |
acagttaaattaaaaatatatacttcgtccattcctttttcttgtcattttaagattatttacgcagtccatatttatgagtttgctttccctttttatt |
34717027 |
T |
|
| Q |
214 |
ttcattcagagtcacagttccatatagtatatgctagcatgtgatttcattaaatttgatgatgttcaatcatttggctataattctatttggaagtata |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34717028 |
ttcattcagagtcgcagttccatatagtatatgctagcatttgatttcattaaatttgatgatgttcaatcatttggttataattctatttggaagtata |
34717127 |
T |
|
| Q |
314 |
taattcaactgcaataaaccaataa |
338 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34717128 |
taattcaactgcaataaaccaataa |
34717152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 9747471 - 9747340
Alignment:
| Q |
18 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatgannnnnnncttacaactctgaatgaaatatgaaggtcatcatggtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||| || |
|
|
| T |
9747471 |
aggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaatgatttttta--tacaactctgaatgaaatataaaggtcgtcatgggca |
9747374 |
T |
|
| Q |
118 |
acagttaaattaaaaatacttcgtccattcctttt |
152 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| |
|
|
| T |
9747373 |
acagttaaa-taaaaatattctgtccattcctttt |
9747340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 10298160 - 10298213
Alignment:
| Q |
18 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga |
71 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
10298160 |
aggaggtacctcagtgtagttctccaaaagagcatatagcagaaaatcaaatga |
10298213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 10290039 - 10290092
Alignment:
| Q |
18 |
aggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga |
71 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10290039 |
aggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatga |
10290092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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